Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03410 ATGCGTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGGCATTTTCAGCCACACTCCGTTATGGATATTACGGGGATTCCCTTATCTTGCTTGGTCCCGTCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAACCAAGGACAAAAATCAAGTCTTTATTCACACTTTCAATAAGAAGCCCCAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTCGTTGAACCGTATAAAAACAAGGTGATTTCTCTGTGGTTAAATCAGGGTTCCACCATCCGTATTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACATGAAGTTTGAACAACTACAGAATTCACAGCCGACCTTCCTCAATGCAATTTCTCTTCGAGAGACTGTTAATGGCAAAGAAGCTGAATACTTGGTTGAGGAAGATGATAGATACCACATTGGGGTTCTAAACATGAATGCAAAGAACATATTCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAGGCTCAGTGTTTTCTTCCCAGAAACTCATTATATTATTCTTACGGCAGCCGACAATGGAGAAGGGATATCGTATGTTGAAATTTCTTTAGTGGCCCGTGTGTTTGTCTACATATTACTTCTAGGAGTTATTGCGATTGTTGTTTTTCTGATTCTGAAAGTCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCATGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACACACCGAAACTGAACCATTGATGCGAGTGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATGAACAAAATTCAGGAACGTATAGTAGCTCTTCGTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACATGCTATGACTGTGCACAGAGGATTGTCGATGGGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAATGCTACAATACAAGCTACAGACAAAACCGCCAAAATCAAAACTTTATGTGTAA 1179 0.4071 MRGCCLLSPFGFLAFSATLRYGYYGDSLILLGPVSSRLITTSSVFVKQLQVSTKDKNQVFIHTFNKKPQLSSQTNWTASDFFLVEPYKNKVISLWLNQGSTIRIRWEEHTTTGLDKLHGMVVKGDMKFEQLQNSQPTFLNAISLRETVNGKEAEYLVEEDDRYHIGVLNMNAKNIFLTMEVNVSAKVYDTTKAKKMCSTENGPCRLSVFFPETHYIILTAADNGEGISYVEISLVARVFVYILLLGVIAIVVFLILKVLGVYDDAEQHSHVTIDVTYRTSNVVATHTETEPLMRVEENRMSYGTNAKDDEQNSGTYSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDGESKVCPICRRLIHKMLQYKLQTKPPKSKLYV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03410 392 SMART ring_2 330 369 IPR001841 -
Viun9g03410 392 Pfam Domain of unknown function (DUF4792) 61 128 IPR032008 -
Viun9g03410 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 380 IPR013083 -
Viun9g03410 392 Pfam Zinc finger, C3HC4 type (RING finger) 327 375 - -
Viun9g03410 392 PANTHER OS05G0521000 PROTEIN 10 376 - -
Viun9g03410 392 Pfam Domain of unknown function (DUF4793) 153 254 IPR032010 -
Viun9g03410 392 ProSiteProfiles Zinc finger RING-type profile. 330 370 IPR001841 -
Viun9g03410 392 SUPERFAMILY RING/U-box 320 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03410 Viun-Chr9 40459640 40463663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03410 297 383 C3H Transcription Factor Family AT3G06140 33.333 2.09e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03410 - - gmx:100777075 579.326