Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03409 ATGGCTCTGTTACATCCACCCACGCGCACTGCACCATCTCAGACTCACCGCTGGCAACATGCGTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCCACACTCCGTTATGGATATTACGGGGATTCCCTTATCTTGCTTGGTCCCGTCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAACCAAGGACAAAAATCAAGTCTTTATTCACACTTTCAATAAGAAGCCCCAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTCGTTGAACCGTATAAAAACAAGGTGATTTCTCTGTGGTTAAATCAGGGTTCCACCATCCGTATTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACATGAAGTTTGAACAACTACAGAATTCACAGCCGACCTTCCTCAATGCAATTTCTCTTCGAGAGACTGTTAATGGCAAAGAAGCTGAATACTTGGTTGAGGAAGATGATAGATACCACATTGGGGTTCTAAACATGAATGCAAAGAACATATTCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAGGCTCAGTGTTTTCTTCCCAGAAACTCATTATATTATTCTTACGGCAGCCGACAATGGAGAAGGGATATCGTATGTTGAAATTTCTTTAGTGGCCCGTGTGTTTGTCTACATATTACTTCTAGGAGTTATTGCGATTGTTGTTTTTCTGATTCTGAAAGTCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCATGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACACACCGAAACTGAACCATTGATGCGAGTGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATGAACAAAATTCAGGAACGTATAGTAGCTCTTCGTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACATGCTATGACTGTGCACAGAGGATTGTCGATGGGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAATGCTACAATACAAGCTACAGACAAAACCGCCAAAATCAAAACTTTATGTGTAA 1233 0.4152 MALLHPPTRTAPSQTHRWQHAWMLPPLAIWISVSATLRYGYYGDSLILLGPVSSRLITTSSVFVKQLQVSTKDKNQVFIHTFNKKPQLSSQTNWTASDFFLVEPYKNKVISLWLNQGSTIRIRWEEHTTTGLDKLHGMVVKGDMKFEQLQNSQPTFLNAISLRETVNGKEAEYLVEEDDRYHIGVLNMNAKNIFLTMEVNVSAKVYDTTKAKKMCSTENGPCRLSVFFPETHYIILTAADNGEGISYVEISLVARVFVYILLLGVIAIVVFLILKVLGVYDDAEQHSHVTIDVTYRTSNVVATHTETEPLMRVEENRMSYGTNAKDDEQNSGTYSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDGESKVCPICRRLIHKMLQYKLQTKPPKSKLYV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03409 410 ProSiteProfiles Zinc finger RING-type profile. 348 388 IPR001841 -
Viun9g03409 410 Pfam Domain of unknown function (DUF4793) 171 272 IPR032010 -
Viun9g03409 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 398 IPR013083 -
Viun9g03409 410 SMART ring_2 348 387 IPR001841 -
Viun9g03409 410 PANTHER OS05G0521000 PROTEIN 22 394 - -
Viun9g03409 410 Pfam Zinc finger, C3HC4 type (RING finger) 345 393 - -
Viun9g03409 410 SUPERFAMILY RING/U-box 338 394 - -
Viun9g03409 410 Pfam Domain of unknown function (DUF4792) 79 146 IPR032008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03409 Viun-Chr9 40459640 40463806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03409 315 401 C3H Transcription Factor Family AT3G06140 33.333 1.70e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03409 - - gmx:100794488 587.03