Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03408 ATGGCTCTGTTACATCCACCCACGCGCACTGCACCATCTCAGACTCACCGCTGGCAACATGCGTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCCACACTCCGTTATGGATATTACGGGGATTCCCTTATCTTGCTTGGTCCCGTCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAACCAAGGACAAAAATCAAGTCTTTATTCACACTTTCAATAAGAAGCCCCAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTCGTTGAACCGTATAAAAACAAGGTGATTTCTCTGTGGTTAAATCAGGGTTCCACCATCCGTATTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACATGAAGTTTGAACAACTACAGAATTCACAGCCGACCTTCCTCAATGCAATTTCTCTTCGAGAGACTGTTAATGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAGGCTCAGTGTTTTCTTCCCAGAAACTCATTATATTATTCTTACGGCAGCCGACAATGGAGAAGGGATATCGTATGTTGAAATTTCTTTAGTGGCCCGTGTGTTTGTCTACATATTACTTCTAGGAGTTATTGCGATTGTTGTTTTTCTGATTCTGAAAGTCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCATGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACACACCGAAACTGAACCATTGATGCGAGTGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATGAACAAAATTCAGGAACGTATAGTAGCTCTTCGTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACATGCTATGACTGTGCACAGAGGATTGTCGATGGGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAATGCTACAATACAAGCTACAGACAAAACCGCCAAAATCAAAACTTTATGTGTAA 1128 0.4202 MALLHPPTRTAPSQTHRWQHAWMLPPLAIWISVSATLRYGYYGDSLILLGPVSSRLITTSSVFVKQLQVSTKDKNQVFIHTFNKKPQLSSQTNWTASDFFLVEPYKNKVISLWLNQGSTIRIRWEEHTTTGLDKLHGMVVKGDMKFEQLQNSQPTFLNAISLRETVNAKVYDTTKAKKMCSTENGPCRLSVFFPETHYIILTAADNGEGISYVEISLVARVFVYILLLGVIAIVVFLILKVLGVYDDAEQHSHVTIDVTYRTSNVVATHTETEPLMRVEENRMSYGTNAKDDEQNSGTYSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDGESKVCPICRRLIHKMLQYKLQTKPPKSKLYV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03408 375 ProSiteProfiles Zinc finger RING-type profile. 313 353 IPR001841 -
Viun9g03408 375 SMART ring_2 313 352 IPR001841 -
Viun9g03408 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Viun9g03408 375 Pfam Domain of unknown function (DUF4792) 79 146 IPR032008 -
Viun9g03408 375 PANTHER OS05G0521000 PROTEIN 22 155 - -
Viun9g03408 375 Pfam Zinc finger, C3HC4 type (RING finger) 310 358 - -
Viun9g03408 375 SUPERFAMILY RING/U-box 303 359 - -
Viun9g03408 375 Pfam Domain of unknown function (DUF4793) 156 237 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03408 Viun-Chr9 40459640 40463810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03408 280 366 C3H Transcription Factor Family AT3G06140 33.333 1.58e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03408 - - gmx:100794488 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03408 9 40459640 40463810 Viun9g03408 9 40459640 40463810 ECH