Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03407 ATGGCTCTGTTACATCCACCCACGCGCACTGCACCATCTCAGACTCACCGCTGGCAACATGCGTGGATGCTGCCTCCTCTCGCCATTTGGATTTCTGTTTCAGCCACACTCCGTTATGGATATTACGGGGATTCCCTTATCTTGCTTGGTCCCGTCTCATCCCGTTTGATTACAACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAACCAAGGACAAAAATCAAGTCTTTATTCACACTTTCAATAAGAAGCCCCAGTTGAGCTCCCAAACTAATTGGACGGCGTCGGATTTTTTCCTCGTTGAACCGTATAAAAACAAGGGTTCCACCATCCGTATTAGGTGGGAAGAACATACTACTACTGGTTTGGATAAGCTACATGGGATGGTGGTTAAAGGAGACATGAAGTTTGAACAACTACAGAATTCACAGCCGACCTTCCTCAATGCAATTTCTCTTCGAGAGACTGTTAATGGCAAAGAAGCTGAATACTTGGTTGAGGAAGATGATAGATACCACATTGGGGTTCTAAACATGAATGCAAAGAACATATTCTTGACTATGGAAGTTAATGTTTCAGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCCACTGAAAATGGACCTTGTAGGCTCAGTGTTTTCTTCCCAGAAACTCATTATATTATTCTTACGGCAGCCGACAATGGAGAAGGGATATCGTATGTTGAAATTTCTTTAGTGGCCCGTGTGTTTGTCTACATATTACTTCTAGGAGTTATTGCGATTGTTGTTTTTCTGATTCTGAAAGTCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCATGTTACAATCGATGTTACATACAGAACAAGTAATGTGGTTGCAACACACACCGAAACTGAACCATTGATGCGAGTGGAGGAAAATCGAATGTCATATGGAACAAATGCAAAAGATGATGAACAAAATTCAGGAACGTATAGTAGCTCTTCGTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACACTGTGCCACATGCTATGACTGTGCACAGAGGATTGTCGATGGGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAATGCTACAATACAAGCTACAGACAAAACCGCCAAAATCAAAACTTTATGTGTAA 1209 0.416 MALLHPPTRTAPSQTHRWQHAWMLPPLAIWISVSATLRYGYYGDSLILLGPVSSRLITTSSVFVKQLQVSTKDKNQVFIHTFNKKPQLSSQTNWTASDFFLVEPYKNKGSTIRIRWEEHTTTGLDKLHGMVVKGDMKFEQLQNSQPTFLNAISLRETVNGKEAEYLVEEDDRYHIGVLNMNAKNIFLTMEVNVSAKVYDTTKAKKMCSTENGPCRLSVFFPETHYIILTAADNGEGISYVEISLVARVFVYILLLGVIAIVVFLILKVLGVYDDAEQHSHVTIDVTYRTSNVVATHTETEPLMRVEENRMSYGTNAKDDEQNSGTYSSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDGESKVCPICRRLIHKMLQYKLQTKPPKSKLYV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03407 402 ProSiteProfiles Zinc finger RING-type profile. 340 380 IPR001841 -
Viun9g03407 402 Pfam Domain of unknown function (DUF4793) 163 264 IPR032010 -
Viun9g03407 402 PANTHER OS05G0521000 PROTEIN 22 386 - -
Viun9g03407 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 390 IPR013083 -
Viun9g03407 402 Pfam Zinc finger, C3HC4 type (RING finger) 337 385 - -
Viun9g03407 402 SUPERFAMILY RING/U-box 330 386 - -
Viun9g03407 402 SMART ring_2 340 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03407 Viun-Chr9 40459640 40463810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03407 307 393 C3H Transcription Factor Family AT3G06140 33.333 1.69e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03407 - - gmx:100794488 566.614