Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03389 ATGTTAACCACCGTCAACAACGACAACTCCTTTTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGCCGAATTCTCCACGCCGTCTTCCGAGAGCCGCCGCCTCCTCATCGCCTGCGCCGCCGACAATTCCGACGAATTCATTCGCCACCTCGTTCTCAACCTCAGTTCCTGTTCCATTGAGGACCAGAAGCAAGCCACCATGGAAATCAGGCTACTCTCCAAGAACAAGGAAGAGAACCGCGTCAAGATCGCAAAAGCCGGCGCGATCGAACCCTTGGTTTCACTCCTATCGTCCTCCTCAGACCTTCAGCTTCAGGAGTACGTGGTGACCGCGATTCTCAATCTCTCGCTCTGCGACGAGAACAAAGAGCTCATCAATTCCTCCGGAGCGGTGAAGCCTCTTGTGAGAGCGCTGGAGACGGGGACGCCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTCCGGCTCTCGCAGAGAGAGGAGGACAGGGTTGCGATAGGGAGGGCGGGGGCGATTCCGCCTCTGGTGAAGCTTCTAGAAGGCGGGGGTTTGCGCGGGAAGAAGGACGCGGCGACAGCGCTGTACGCGGTGTGTTCGACGAAGGAGAACAAGGTGAGGGCGGTGAGGGCGGGGGTTATGAGGGCGCTGGTGGAGCTGATGGCGGACCTGGGATCGAGCATGGTGGACAAGGCGGTGTACGTGGTGAGCGTGGTTGTTGGGGTGGTGGAGGGGAGGGCGGCGCTGGTGGAAGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATCGCCGTTGGGGTTCTGTTGCAGATTTGCGAGGAGAGTTGGGTGTACCGTACTATGGTGGCACGCGAAGGAGCCATTCCACCCCTCGTTGCTTTCTCACAGTCACACTCCAATCGCCCCAGACACAAGGCTGAGAAACTCATAGAGCTTCTACGACAACCAAGATCCGGCAATGGCGCTGGTCGTTCCTAG 1005 0.595 MLTTVNNDNSFSAFSDCNSDRSAEFSTPSSESRRLLIACAADNSDEFIRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPLVSLLSSSSDLQLQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPLVKLLEGGGLRGKKDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMVDKAVYVVSVVVGVVEGRAALVEEGGIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIELLRQPRSGNGAGRS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03389 334 Pfam Armadillo/beta-catenin-like repeat 162 195 IPR000225 GO:0005515
Viun9g03389 334 Pfam Armadillo/beta-catenin-like repeat 120 158 IPR000225 GO:0005515
Viun9g03389 334 Pfam Armadillo/beta-catenin-like repeat 78 117 IPR000225 GO:0005515
Viun9g03389 334 SUPERFAMILY ARM repeat 44 315 IPR016024 -
Viun9g03389 334 SMART arm_5 201 241 IPR000225 GO:0005515
Viun9g03389 334 SMART arm_5 119 159 IPR000225 GO:0005515
Viun9g03389 334 SMART arm_5 242 282 IPR000225 GO:0005515
Viun9g03389 334 SMART arm_5 160 200 IPR000225 GO:0005515
Viun9g03389 334 SMART arm_5 77 118 IPR000225 GO:0005515
Viun9g03389 334 FunFam RING-type E3 ubiquitin transferase 37 328 - -
Viun9g03389 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 130 172 IPR000225 GO:0005515
Viun9g03389 334 Gene3D - 14 184 IPR011989 -
Viun9g03389 334 PANTHER U BOX DOMAIN-CONTAINING 47 323 - -
Viun9g03389 334 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 88 131 IPR000225 GO:0005515
Viun9g03389 334 Gene3D - 187 323 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03389 Viun-Chr9 40338761 40340440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03389 26 333 U-box Gene Family AT2G23140 48.377 7.96e-82 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03389 - - csv:101208714 449.899