Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03381 ATGGCTCCTACTCCTGAGCCTCCACCGATCAACATTGAACCTGAATATTGTCCTCAAGCGGTGACGCAATGGTACTATCTCGCATCACTACCAAGTAACAGGAGAGAATGTTCATTACGCAGGGACCTATCGTTACAAGCCAAGAAACATCTTCGTTATCTGGGTTGGACATTTTGGTACATCGACAAGAAAGATAAGTGGGAACTGCGTTACACATCACCCATCACCGGCAAGAATCACATTTCTCTCGCAAGGGCATGTAAAGCTTGCATAGAAGAGGGAGGCTGCATTGAAAACCCTCAAGATTTTCAAGAAAACAACGTTGTTCATGTCGAATATCCTACTTCTGAACCAAAAAAGGAGAAAAGAGAATCCGAAAAGAAAACTAGGCTGTGCAAGAGAAGACAAAAGGATGATCACGGTGATGAGTTGGGAGAAGGCTCTAGTTCTATGAATGGCAGAAGAGGTAAGCCTGCGCGGTCAATCAAGGGTGAGACACCATCTTCTAGGTCTTCACAACCCCATCGTCGAACCCTTATCCCATGGTTGATAGAAAACAGTGCTGTGGGTTTAGATTCCGTGGTATCCTGTCGTGGTTCAAATGGCGTGGTCAAGAAAGGGAAGCTATCGTACAATGGCATAGCTTGTGATTGTTGTGGCAAGTTTTTTTCTCCCACTCGCTTTGAGGCTCATGCCAGGTGTCAAAAACACAGACCAAATGCTAGCATTTTCTTGGAAGATGGAAGGTCATTGTTAGATTGTAAAAACGAGGCCTTGAGTTCTCAGCGAAATGGGTTTGTGAAAGAAGAGGAAATCGATGACTGTGGTTATCCAAATGACAGCACGTGTGCTGTTTGTCGTTACGGTGGTGAACTTGTGCTGTGTGATGGATGCCCCTCTTCGTTCCACCTCAAGTGTTTAGGTTTAACCGTTGTCCCAGACGGTGATTGGTTCTGCCCACTTTGCTGTTGCAAAATATGCAGGCGACCCAGATGCAGAGATGACCATGCTCATAATGTGGGTGTTAACAGCATTCTAGTTTGTCCTCAGTGTGAGAGAAAATACCATTTTGGATGCTTAAAAGCTCCAGCATCATCACATACCATGTTGGAAAAGGAAGAAGATGATGTTGGTAACAGGAATTGGTTTTGCAGTAGAGACTGCGAGAAGATATTTTTCGGTCTGCAGGAGCTTCTGGGAAAAAACATTAATGTTGATGCAGATAATGTTACTTGGACGCTGTTGAAGGCAGTGAAAAGGGATAGCAGTGGAGAAGATTATCTTAATTTGGAAGGAGTTGAAGGTTTGAGTGAAAACGAAAGGAAGCTGAGTGTAGCTCTTGATGTATTGCGTGGGAGTTTTGATCCGATTATTGACGCTTTTTCTGGTAGAGATTTGATAGCAGACGTTGTTTTCAGCAGAGGGTCAGAACTGGGTCGGTTGAACTTTAGTGGATTTTACACTGTGGTTCTGGAGAAGGATAAAGAAGTGGTTTCTGCTGCTACTGTGAGGATTTTGGGGAAGAATGTTGCGGAAATTCCGTTTGTGGCTACTAGGATGCAGTGTAGAAGACAAGGAATGTGTAGCATGTTGATGAATGAGATTGAAAAACAGTTAAGTTACTTGGGAGTGGAGAGGTTGGTTCTGCCTTCGTCGTGCAGTGCGATAAACACTTGGACAAAATCATTTGATTTTGTAAAGATGAAACCTTCAGATAAGTCTAAGCTACTTGATTATGTTTTTCTCAACTTCGAGGGTACCATCATGTGCCACAAACCTTTGTTGCAAGAAACTTATGTATGA 1803 0.4343 MAPTPEPPPINIEPEYCPQAVTQWYYLASLPSNRRECSLRRDLSLQAKKHLRYLGWTFWYIDKKDKWELRYTSPITGKNHISLARACKACIEEGGCIENPQDFQENNVVHVEYPTSEPKKEKRESEKKTRLCKRRQKDDHGDELGEGSSSMNGRRGKPARSIKGETPSSRSSQPHRRTLIPWLIENSAVGLDSVVSCRGSNGVVKKGKLSYNGIACDCCGKFFSPTRFEAHARCQKHRPNASIFLEDGRSLLDCKNEALSSQRNGFVKEEEIDDCGYPNDSTCAVCRYGGELVLCDGCPSSFHLKCLGLTVVPDGDWFCPLCCCKICRRPRCRDDHAHNVGVNSILVCPQCERKYHFGCLKAPASSHTMLEKEEDDVGNRNWFCSRDCEKIFFGLQELLGKNINVDADNVTWTLLKAVKRDSSGEDYLNLEGVEGLSENERKLSVALDVLRGSFDPIIDAFSGRDLIADVVFSRGSELGRLNFSGFYTVVLEKDKEVVSAATVRILGKNVAEIPFVATRMQCRRQGMCSMLMNEIEKQLSYLGVERLVLPSSCSAINTWTKSFDFVKMKPSDKSKLLDYVFLNFEGTIMCHKPLLQETYV 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03381 600 MobiDBLite consensus disorder prediction 107 176 - -
Viun9g03381 600 CDD NAT_SF 489 549 - -
Viun9g03381 600 Gene3D - 446 597 - -
Viun9g03381 600 MobiDBLite consensus disorder prediction 114 145 - -
Viun9g03381 600 Pfam Acetyltransferase (GNAT) family 487 565 IPR000182 GO:0016747
Viun9g03381 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 391 IPR013083 -
Viun9g03381 600 SMART PHD_3 324 388 IPR001965 -
Viun9g03381 600 SMART PHD_3 282 323 IPR001965 -
Viun9g03381 600 ProSiteProfiles Zinc finger PHD-type profile. 280 325 IPR019787 -
Viun9g03381 600 SUPERFAMILY FYVE/PHD zinc finger 269 333 IPR011011 -
Viun9g03381 600 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 481 561 IPR016181 -
Viun9g03381 600 Pfam Tify domain binding domain 207 258 IPR032308 -
Viun9g03381 600 PANTHER PHD FINGER PROTEIN 12 18 596 IPR042163 GO:0003714|GO:0045892
Viun9g03381 600 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 433 585 IPR000182 GO:0016747
Viun9g03381 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 323 IPR013083 -
Viun9g03381 600 Pfam PHD-finger 283 324 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03381 Viun-Chr9 40298880 40300682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03381 160 542 PHD Transcription Factor Family AT5G58610 43.523 4.05e-95 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g03381 Acetyltransf_1 1.7e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03381 - - vra:106760454 1040.41