Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03379 ATGTTGTGCGCCTGTTCTTCTGGTGAGCAGTTCAAATTCGAAGAGCCGCCGCAGTCGCCGGACTCCCTCGCCACCAGAGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCACCGGAGAATGGGAGCCTAAATTCGATGAGACGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAACTCTTTCCTTAAACTATGAGGAGGCTAGGGCTTTATTGGGAAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACATCTAGAATGATCAAGGCTATTACTGAAAGAATCAAGCAAAGGAAACCACGTTCTAAGGCAGATATCGTGGTTTCAAATGTGATGTCATTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGGTCACTGGAGGAACTTGGGGAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAAGCTGCCCTTCCGAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGGCTTTGGATCAAAGCAGGATTTCTGGATGAAGCTGTAGCTGCATATCGTCGTGCTCTGGTCAAGCCATGGAGTTTGGAGCCACAAAGGTTGGCTTCTGTACAAAAGGATTTAGCTACGATACTACTCTATGGAGGTGTAGAAGTTAGCTTATCCTCTCAGCAGCAGGTGTGGGGTAAAACAACTCCTACCAACAGTGTTGAAGAAGCGATACATTTGCTAGTAATACTCATGAGCAAGGTGGCAATTGGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACGTTTGCACTTTCAGTCACTGGCATGTTTGAACTACTTGCGGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGGGCTGAGAGATGGTACTTTCTTGCTTTGTGTTTTAATGCAACAGGACATGATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGCGGCAGTTCTGAAGCAAACCATGTACCGCATTTTCCTTCATTTTTGCTTGGAGCAAAACTCTGTTCCCTAGATCCTCGCCATGCTCATGAAGGCATTAACTTTTCACGTAAAGTTATTGAGCTAGCTAAGCATCAAAATGAGCATTTTCTGAGTCAAGGCCATAAATTTCTTGGAATCTGCTATGGTGCTGCAGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGTACTCTCTAAACTGTGCTGCCGTAAATGGAAATGATGACCTGGAAGCAATATTCAACCTCGGATTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGACGTTCTCAGACATGAGTGCTGGCAGTTCCAGAGGTTGGCAGCTGTTAGCACTTATAGTATCTGCACTGCAGCGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGATCTTCTGAGATTGAAAGCTGTACTTCAAATTGCTCAACAGCAACCCAGGCAAGCAATAGAGACATATCGAATCTTGCTTGCGCTAATTCAAGCCAAAAAGGAGCTTTGGCTTCAAGAAAACAATAGTAATCGAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAAGAAGTTGGAAATGGAAGCCTGGGAGGATTTGGCTACAATTTATACAGATATCGGTTCCTTGCTCGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACAGGCGTGGTGCTTGAAGCTCAATCATTATACAGGGAAGCATTTGTTTCCTTTTCAATATCATTGTCAGTAGAACCAGATTACATTCCCAGTATCATTTCTACCGCAGAATTATTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCAGGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGATCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2151 0.4231 MLCACSSGEQFKFEEPPQSPDSLATRDFSASGLSSRTTGEWEPKFDETQVEQAESTLKETLSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTSRMIKAITERIKQRKPRSKADIVVSNVMSLHSVSLLLEAILLKARSLEELGECIEAAKECRIILDTVEAALPNGMPEGIGEDCKLQEMFHKALELLPRLWIKAGFLDEAVAAYRRALVKPWSLEPQRLASVQKDLATILLYGGVEVSLSSQQQVWGKTTPTNSVEEAIHLLVILMSKVAIGEIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRAERWYFLALCFNATGHDEVALNLLRKACGSSEANHVPHFPSFLLGAKLCSLDPRHAHEGINFSRKVIELAKHQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLYSLNCAAVNGNDDLEAIFNLGLENAIQRNLDAAYNNIMTFSDMSAGSSRGWQLLALIVSALQRFKDAETIVDFALDEAGGMDQLDLLRLKAVLQIAQQQPRQAIETYRILLALIQAKKELWLQENNSNREQAFRHEALTEKKLEMEAWEDLATIYTDIGSLLDAKTCVDKAQLIEFFSPRSWHITGVVLEAQSLYREAFVSFSISLSVEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNQDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03379 716 SUPERFAMILY TPR-like 564 707 IPR011990 GO:0005515
Viun9g03379 716 SUPERFAMILY TPR-like 51 387 IPR011990 GO:0005515
Viun9g03379 716 Gene3D Tetratricopeptide repeat domain 551 657 IPR011990 GO:0005515
Viun9g03379 716 Gene3D Tetratricopeptide repeat domain 658 712 IPR011990 GO:0005515
Viun9g03379 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Viun9g03379 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Viun9g03379 716 SMART tpr_5 512 545 IPR019734 GO:0005515
Viun9g03379 716 SMART tpr_5 476 509 IPR019734 GO:0005515
Viun9g03379 716 SMART tpr_5 319 352 IPR019734 GO:0005515
Viun9g03379 716 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Viun9g03379 716 MobiDBLite consensus disorder prediction 5 47 - -
Viun9g03379 716 Gene3D Tetratricopeptide repeat domain 259 550 IPR011990 GO:0005515
Viun9g03379 716 Gene3D Tetratricopeptide repeat domain 39 251 IPR011990 GO:0005515
Viun9g03379 716 MobiDBLite consensus disorder prediction 22 38 - -
Viun9g03379 716 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Viun9g03379 716 SUPERFAMILY TPR-like 430 600 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03379 Viun-Chr9 40280671 40284853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03379 1 715 Calmodulin-binding Proteins AT1G27460 59.110 0.0 855