Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03376 ATGTTGTGCGCCTGTTCTTCTGGTGAGCAGTTCAAATTCGAAGAGCCGCCGCAGTCGCCGGACTCCCTCGCCACCAGAGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCACCGGAGAATGGGAGCCTAAATTCGATGAGACGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAACTCTTTCCTTAAACTATGAGGAGGCTAGGGCTTTATTGGGAAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACATCTAGAATGATCAAGGCTATTACTGAAAGAATCAAGCAAAGGAAACCACGTTCTAAGGCAGATATCGTGGTTTCAAATGTGATGTCATTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGGTCACTGGAGGAACTTGGGGAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAAGCTGCCCTTCCGAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGGCTTTGGATCAAAGCAGGATTTCTGGATGAAGCTGTAGCTGCATATCGTCGTGCTCTGGTCAAGCCATGGAGTTTGGAGCCACAAAGGTTGGCTTCTGTACAAAAGGATTTAGCTACGATACTACTCTATGGAGGTGTAGAAGTTAGCTTATCCTCTCAGCAGCAGGTGTGGGGTAAAACAACTCCTACCAACAGTGTTGAAGAAGCGATACATTTGCTAGTAATACTCATGAGCAAGGTGGCAATTGGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACGTTTGCACTTTCAGTCACTGGCATGTTTGAACTACTTGCGGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGGGCTGAGAGATGGTACTTTCTTGCTTTGTGTTTTAATGCAACAGGACATGATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGCGGCAGTTCTGAAGCAAACCATGTACCGCATTTTCCTTCATTTTTGCTTGGAGCAAAACTCTGTTCCCTAGATCCTCGCCATGCTCATGAAGGCATTAACTTTTCACGTAAAGTTATTGAGCTAGCTAAGCATCAAAATGAGCATTTTCTGAGTCAAGGCCATAAATTTCTTGGAATCTGCTATGGTGCTGCAGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGTACTCTCTAAACTGTGCTGCCGTAAATGGAAATGATGACCTGGAAGCAATATTCAACCTCGGATTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGACGTTCTCAGACATGAGTGCTGGCAGTTCCAGAGGTTGGCAGCTGTTAGCACTTATAGTATCTGCACTGCAGCGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGATCTTCTGAGATTGAAAGCTGTACTTCAAATTGCTCAACAGCAACCCAGGCAAGCAATAGAGACATATCGAATCTTGCTTGCGCTAATTCAAGCCAAAAAGGAGCTTTGGCTTCAAGAAAACAATAGTAATCGAGAACAAGCATTCAGGCATGAGCAGGCATTAACAGAAAAGAAGTTGGAAATGGAAGCCTGGGAGGATTTGGCTACAATTTATACAGATATCGGTTCCTTGCTCGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACAGGCGTGGTGCTTGAAGCTCAATCATTATACAGGGAAGCATTTGTTTCCTTTTCAATATCATTGTCAGTAGAACCAGATTACATTCCCAGTATCATTTCTACCGCAGAATTATTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCAGGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGATCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2154 0.4234 MLCACSSGEQFKFEEPPQSPDSLATRDFSASGLSSRTTGEWEPKFDETQVEQAESTLKETLSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTSRMIKAITERIKQRKPRSKADIVVSNVMSLHSVSLLLEAILLKARSLEELGECIEAAKECRIILDTVEAALPNGMPEGIGEDCKLQEMFHKALELLPRLWIKAGFLDEAVAAYRRALVKPWSLEPQRLASVQKDLATILLYGGVEVSLSSQQQVWGKTTPTNSVEEAIHLLVILMSKVAIGEIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRAERWYFLALCFNATGHDEVALNLLRKACGSSEANHVPHFPSFLLGAKLCSLDPRHAHEGINFSRKVIELAKHQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLYSLNCAAVNGNDDLEAIFNLGLENAIQRNLDAAYNNIMTFSDMSAGSSRGWQLLALIVSALQRFKDAETIVDFALDEAGGMDQLDLLRLKAVLQIAQQQPRQAIETYRILLALIQAKKELWLQENNSNREQAFRHEQALTEKKLEMEAWEDLATIYTDIGSLLDAKTCVDKAQLIEFFSPRSWHITGVVLEAQSLYREAFVSFSISLSVEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNQDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03376 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Viun9g03376 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Viun9g03376 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Viun9g03376 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Viun9g03376 717 SMART tpr_5 476 509 IPR019734 GO:0005515
Viun9g03376 717 SMART tpr_5 512 545 IPR019734 GO:0005515
Viun9g03376 717 Gene3D Tetratricopeptide repeat domain 38 269 IPR011990 GO:0005515
Viun9g03376 717 MobiDBLite consensus disorder prediction 5 47 - -
Viun9g03376 717 SUPERFAMILY TPR-like 51 387 IPR011990 GO:0005515
Viun9g03376 717 SUPERFAMILY TPR-like 564 708 IPR011990 GO:0005515
Viun9g03376 717 Gene3D Tetratricopeptide repeat domain 554 658 IPR011990 GO:0005515
Viun9g03376 717 Gene3D Tetratricopeptide repeat domain 425 553 IPR011990 GO:0005515
Viun9g03376 717 MobiDBLite consensus disorder prediction 22 38 - -
Viun9g03376 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Viun9g03376 717 Gene3D Tetratricopeptide repeat domain 659 713 IPR011990 GO:0005515
Viun9g03376 717 SUPERFAMILY TPR-like 430 601 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03376 Viun-Chr9 40280671 40284855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03376 1 716 Calmodulin-binding Proteins AT1G27460 58.750 0.0 856