Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03363 ATGTGGCTGGATACGGGGAGGACAAATGTTCATCTTGGCTGTTTTCGCTCTGTTGATTCCAACTTTTTTGGTTGTTTTTCCATACTTCCTGCAACCGAACTTGTTCCTGGGGATATTGTGGAGGTTTCTGTGGGCTGCAAAATTCCTGCTGATATGAGGATGATTGAGATGCTAAGTAATCAAGTGCGTGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCCGTGGAGAAAGAGCTGAAAATAACCACAACTTCAAATGCTGTATACCAAGACAAAACAAATATTCTGTTCTCGGGTACGGTTGTAGTTGCTGGTAGGGCGAGAGCTGTTGTGGTGGGAGTTGGTCCTAATACGGCCATGGGCAGCATACGAGATTCAATGTTGCGAACAGAGGATGAGGCAACACCATTGAAAAAGAAGCTGGACGAGTTTGGGACCTTTTTGGCCAAGGTTATAGCAGGGATTTGTGTTTTGGTGTGGATTGTAAATATTGGTCACTTCCGTGACCCTTCTCACGGTGGTTTCTTGAGTGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCAGAAGGGCTGCCTGCAGTTGTGACAACGTGTTTGGCTCTTGGGACAAAGCGTATGGCTAGGTTGAATGCCATTGTTCGCTCCTTGCCATCGGTCGAGACATTGGGTTGCACAACTGTTATTTGCAGTGACAAAACTGGGACGCTAACTACTAACATAATGTCAGTTGCGAAGGTTCAGGATGATACAAAATTGTTATTCACGTTGCTTTCCAATGTATGTGTTGTTGAATCTGCAAATCGTGGCCCTGTTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGAATAATATTTGACAGTACAGGGATGCAGCTTGACTTTCCTGCTGAATTGCCTTGTCTTCTTCACATGGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTGCAGTATAATCCTGATAAAGGGAATTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTCTTGGCAGAAAAGGTTGGTCTCCCTGGTTTCAATTCCATGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATACATGTTTTGGAGTTTTCTCGAGATCGGAAAATGATGAGTGTGCTTTGCAGCCGGAACCAGATGCATATTTTGTTCTCAAAAGGTGCCCCAGAAAGTATAATATCTAGATGTTCAACCATTCTGTGCAACAGTGATGGTTCTATTGTGCCACTTACTGCTGATATTCGAGCAGAGCTCGACTCAAGATTCAACAGTTTTGCAGGAAAAGAAACATTAAGATGCCTTGCTTTGGCCCTGAAATGGATGCCCTCAATTCAACAGTCATTGTCCTTTGATGATGAGAAGGATCTTACATTTATTGGGTTGGTTGGGATGCTGGATCCTCCACGAGATGAAGTAAGAAATGCAATGCTTTCGTGTATGACTGCTGGCATCCGTGTTATTGTCGTCACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATAGATTTTTCTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCACCACTGCAGCAAACTATAGCATTGCAACGTATGGCACTTTTTACTAGGGTTGAGCCTTCTCATAAAAGGATCCTGGTAGAAGCATTGCAGCACCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTTAATGATGCACCAGCACTAAAGAAGGCGGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTTGCCAAGAGTGCTTCAGACATGGTGCTCGCTGATGACAACTTTGCCTCTATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTCGATACATGATTTCTTCCAATATTGGCGAAGTAGTTTGTATATTTGTGGCTGCAGTGCTTGGAATACCGGATACCCTTGCCCCTGTCCAATTGCTTTGGGTCAATTTGGTTACTGACGGATTACCTGCCACTGCTATTGGCTTCAATAAACAAGACTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCCGTTGTTTCTGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCTACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATGGTGGCCCTAAACTTCCATACACAGAATTGATGAATTTTGATACCTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCGTCTACTGTATCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTCAGTGAAAATCAATCTCTTCTGGTTATCCCTCCATGGAGTAACATGTGGCTTGTTGCTTCTATAATCATAACTATGCTTCTTCACATACTAATCTTATATGTTCACCCACTATCGATTCTTTTCTCTGTAACACCCTTATCTTGGGCTGACTGGACAGTTGTCCTCTATCTTTCGTTACCTGTTATAGTCATTGATGAGGTGTTGAAGTTCTTCTCCAGAAATCCCGTCGGTTTTAGATTCAGATTATGGTTCAGGAGGTCTGATTTACTTCCAAAAAAAGATTTACATGAAAAGTAA 2724 0.4269 MWLDTGRTNVHLGCFRSVDSNFFGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESSSVEKELKITTTSNAVYQDKTNILFSGTVVVAGRARAVVVGVGPNTAMGSIRDSMLRTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNIMSVAKVQDDTKLLFTLLSNVCVVESANRGPVVSEYSVSGTTYAPEGIIFDSTGMQLDFPAELPCLLHMAMCSALCNESTLQYNPDKGNYEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLTKHERASYCNHYWEEQFRKIHVLEFSRDRKMMSVLCSRNQMHILFSKGAPESIISRCSTILCNSDGSIVPLTADIRAELDSRFNSFAGKETLRCLALALKWMPSIQQSLSFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDQLIDFSEHSYTASEFEELPPLQQTIALQRMALFTRVEPSHKRILVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYSDGGPKLPYTELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVASIIITMLLHILILYVHPLSILFSVTPLSWADWTVVLYLSLPVIVIDEVLKFFSRNPVGFRFRLWFRRSDLLPKKDLHEK 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03363 907 NCBIfam calcium-translocating P-type ATPase, SERCA-type 31 752 IPR005782 GO:0005388|GO:0006816|GO:0016020
Viun9g03363 907 FunFam Calcium-transporting ATPase 20 129 - -
Viun9g03363 907 SUPERFAMILY HAD-like 484 645 IPR036412 -
Viun9g03363 907 NCBIfam HAD-IC family P-type ATPase 30 260 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03363 907 NCBIfam HAD-IC family P-type ATPase 567 682 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03363 907 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 244 495 IPR023299 GO:0000166
Viun9g03363 907 SUPERFAMILY Calcium ATPase, transduction domain A 26 127 IPR008250 -
Viun9g03363 907 Gene3D - 234 641 IPR023214 -
Viun9g03363 907 PRINTS P-type cation-transporting ATPase superfamily signature 513 523 - -
Viun9g03363 907 PRINTS P-type cation-transporting ATPase superfamily signature 491 502 - -
Viun9g03363 907 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Viun9g03363 907 PRINTS P-type cation-transporting ATPase superfamily signature 597 616 - -
Viun9g03363 907 PRINTS P-type cation-transporting ATPase superfamily signature 65 79 - -
Viun9g03363 907 PRINTS P-type cation-transporting ATPase superfamily signature 620 632 - -
Viun9g03363 907 SFLD C1.7: P-type atpase like 218 649 - -
Viun9g03363 907 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 593 886 - -
Viun9g03363 907 Pfam E1-E2 ATPase 29 216 - -
Viun9g03363 907 FunFam Calcium-transporting ATPase 262 498 - -
Viun9g03363 907 SUPERFAMILY Calcium ATPase, transmembrane domain M 129 882 IPR023298 -
Viun9g03363 907 FunFam Calcium-transporting ATPase, putative 104 233 - -
Viun9g03363 907 ProSitePatterns E1-E2 ATPases phosphorylation site. 239 245 IPR018303 -
Viun9g03363 907 SFLD p-type atpase 218 649 IPR044492 -
Viun9g03363 907 PRINTS H+-transporting ATPase (proton pump) signature 569 585 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03363 907 PRINTS H+-transporting ATPase (proton pump) signature 597 613 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03363 907 PRINTS H+-transporting ATPase (proton pump) signature 628 653 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03363 907 PANTHER CALCIUM-TRANSPORTING ATPASE 26 883 - -
Viun9g03363 907 Pfam Cation transport ATPase (P-type) 321 430 - -
Viun9g03363 907 Gene3D - 29 129 - -
Viun9g03363 907 Gene3D - 247 498 IPR023299 GO:0000166
Viun9g03363 907 Pfam haloacid dehalogenase-like hydrolase 489 611 - -
Viun9g03363 907 FunFam Sodium/potassium-transporting ATPase subunit alpha 490 636 - -
Viun9g03363 907 Pfam Cation transporting ATPase, C-terminus 681 880 IPR006068 -
Viun9g03363 907 Gene3D - 130 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03363 Viun-Chr9 40214831 40234492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03363 24 901 Primary Pumps ATPases(2) AT1G10130 83.371 0.0 1506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03363 K05853 - gmx:100783509 1648.64