Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03362 ATGAGGATGATTGAGATGCTAAGTAATCAAGTGCGTGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCCGTGGAGAAAGAGCTGAAAATAACCACAACTTCAAATGCTGTATACCAAGACAAAACAAATATTCTGTTCTCGGGTACGGTTGTAGTTGCTGGTAGGGCGAGAGCTGTTGTGGTGGGAGTTGGTCCTAATACGGCCATGGGCAGCATACGAGATTCAATGTTGCGAACAGAGGATGAGGCAACACCATTGAAAAAGAAGCTGGACGAGTTTGGGACCTTTTTGGCCAAGGTTATAGCAGGGATTTGTGTTTTGGTGTGGATTGTAAATATTGGTCACTTCCGTGACCCTTCTCACGGTGGTTTCTTGAGTGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCAGAAGGGCTGCCTGCAGTTGTGACAACGTGTTTGGCTCTTGGGACAAAGCGTATGGCTAGGTTGAATGCCATTGTTCGCTCCTTGCCATCGGTCGAGACATTGGGTTGCACAACTGTTATTTGCAGTGACAAAACTGGGACGCTAACTACTAACATAATGTCAGTTGCGAAGGTTCAGGATGATACAAAATTGTTATTCACGTTGCTTTCCAATGTATGTGTTGTTGAATCTGCAAATCGTGGCCCTGTTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGAATAATATTTGACAGTACAGGGATGCAGCTTGACTTTCCTGCTGAATTGCCTTGTCTTCTTCACATGGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTGCAGTATAATCCTGATAAAGGGAATTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTCTTGGCAGAAAAGGTTGGTCTCCCTGGTTTCAATTCCATGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATACATGTTTTGGAGTTTTCTCGAGATCGGAAAATGATGAGTGTGCTTTGCAGCCGGAACCAGATGCATATTTTGTTCTCAAAAGGTGCCCCAGAAAGTATAATATCTAGATGTTCAACCATTCTGTGCAACAGTGATGGTTCTATTGTGCCACTTACTGCTGATATTCGAGCAGAGCTCGACTCAAGATTCAACAGTTTTGCAGGAAAAGAAACATTAAGATGCCTTGCTTTGGCCCTGAAATGGATGCCCTCAATTCAACAGTCATTGTCCTTTGATGATGAGAAGGATCTTACATTTATTGGGTTGGTTGGGATGCTGGATCCTCCACGAGATGAAGTAAGAAATGCAATGCTTTCGTGTATGACTGCTGGCATCCGTGTTATTGTCGTCACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATAGATTTTTCTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCACCACTGCAGCAAACTATAGCATTGCAACGTATGGCACTTTTTACTAGGGTTGAGCCTTCTCATAAAAGGATCCTGGTAGAAGCATTGCAGCACCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTTAATGATGCACCAGCACTAAAGAAGGCGGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTTGCCAAGAGTGCTTCAGACATGGTGCTCGCTGATGACAACTTTGCCTCTATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTCGATACATGATTTCTTCCAATATTGGCGAAGTAGTTTGTATATTTGTGGCTGCAGTGCTTGGAATACCGGATACCCTTGCCCCTGTCCAATTGCTTTGGGTCAATTTGGTTACTGACGGATTACCTGCCACTGCTATTGGCTTCAATAAACAAGACTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCCGTTGTTTCTGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCTACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATGGTGGCCCTAAACTTCCATACACAGAATTGATGAATTTTGATACCTGCCCAACCAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCGTCTACTGTATCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTCAGTGAAAATCAATCTCTTCTGGTTATCCCTCCATGGAGTAACATGTGGCTTGTTGCTTCTATAATCATAACTATGCTTCTTCACATACTAATCTTATATGTTCACCCACTATCGATTCTTTTCTCTGTAACACCCTTATCTTGGGCTGACTGGACAGTTGTCCTCTATCTTTCGTTACCTGTTATAGTCATTGATGAGGTGTTGAAGTTCTTCTCCAGAAATCCCGTCGGTTTTAGATTCAGATTATGGTTCAGGAGGTCTGATTTACTTCCAAAAAAAGATTTACATGAAAAGTAA 2571 0.4255 MRMIEMLSNQVRVDQAILTGESSSVEKELKITTTSNAVYQDKTNILFSGTVVVAGRARAVVVGVGPNTAMGSIRDSMLRTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNIMSVAKVQDDTKLLFTLLSNVCVVESANRGPVVSEYSVSGTTYAPEGIIFDSTGMQLDFPAELPCLLHMAMCSALCNESTLQYNPDKGNYEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLTKHERASYCNHYWEEQFRKIHVLEFSRDRKMMSVLCSRNQMHILFSKGAPESIISRCSTILCNSDGSIVPLTADIRAELDSRFNSFAGKETLRCLALALKWMPSIQQSLSFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDQLIDFSEHSYTASEFEELPPLQQTIALQRMALFTRVEPSHKRILVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYSDGGPKLPYTELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNMWLVASIIITMLLHILILYVHPLSILFSVTPLSWADWTVVLYLSLPVIVIDEVLKFFSRNPVGFRFRLWFRRSDLLPKKDLHEK 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03362 856 NCBIfam HAD-IC family P-type ATPase 516 631 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03362 856 NCBIfam HAD-IC family P-type ATPase 6 210 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03362 856 Gene3D - 196 447 IPR023299 GO:0000166
Viun9g03362 856 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 542 835 - -
Viun9g03362 856 Gene3D - 79 831 - -
Viun9g03362 856 PRINTS P-type cation-transporting ATPase superfamily signature 462 472 - -
Viun9g03362 856 PRINTS P-type cation-transporting ATPase superfamily signature 14 28 - -
Viun9g03362 856 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Viun9g03362 856 PRINTS P-type cation-transporting ATPase superfamily signature 569 581 - -
Viun9g03362 856 PRINTS P-type cation-transporting ATPase superfamily signature 546 565 - -
Viun9g03362 856 PRINTS P-type cation-transporting ATPase superfamily signature 440 451 - -
Viun9g03362 856 FunFam Sodium/potassium-transporting ATPase subunit alpha 439 585 - -
Viun9g03362 856 Pfam Cation transport ATPase (P-type) 270 379 - -
Viun9g03362 856 PRINTS H+-transporting ATPase (proton pump) signature 577 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03362 856 PRINTS H+-transporting ATPase (proton pump) signature 546 562 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03362 856 PRINTS H+-transporting ATPase (proton pump) signature 518 534 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03362 856 Pfam Cation transporting ATPase, C-terminus 630 829 IPR006068 -
Viun9g03362 856 ProSitePatterns E1-E2 ATPases phosphorylation site. 188 194 IPR018303 -
Viun9g03362 856 Pfam E1-E2 ATPase 8 165 - -
Viun9g03362 856 Gene3D - 1 78 - -
Viun9g03362 856 FunFam Calcium-transporting ATPase, putative 53 182 - -
Viun9g03362 856 SFLD p-type atpase 167 598 IPR044492 -
Viun9g03362 856 FunFam Calcium-transporting ATPase 211 447 - -
Viun9g03362 856 Gene3D - 183 590 IPR023214 -
Viun9g03362 856 SUPERFAMILY Calcium ATPase, transduction domain A 2 76 IPR008250 -
Viun9g03362 856 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 193 444 IPR023299 GO:0000166
Viun9g03362 856 NCBIfam calcium-translocating P-type ATPase, SERCA-type 8 701 IPR005782 GO:0005388|GO:0006816|GO:0016020
Viun9g03362 856 Pfam haloacid dehalogenase-like hydrolase 438 560 - -
Viun9g03362 856 SUPERFAMILY Calcium ATPase, transmembrane domain M 78 831 IPR023298 -
Viun9g03362 856 PANTHER CALCIUM-TRANSPORTING ATPASE 6 832 - -
Viun9g03362 856 SFLD C1.7: P-type atpase like 167 598 - -
Viun9g03362 856 SUPERFAMILY HAD-like 433 594 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03362 Viun-Chr9 40214831 40234555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03362 1 850 Primary Pumps ATPases(2) AT1G10130 82.941 0.0 1452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03362 K05853 - gmx:100783509 1592.02