Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03354 ATGCCTCCGTACCAAGAACACCACCTAGTGCCAACGCAAACAACAACCATGAAGGATGCCAATGCTACTGCCAACGTTTCGGATCTGAAAACGTTGATTGAGGAGCTCGAGTCATCGATTGAGGTCCCTTCCGTTTTCATCTGCCCAATCTCGCTCGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGGCAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACCACAATGCAAGACCTCTGGGACGATTCCGTCACGCCCAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAAAAGTACCTCGCCATGAAGAAGAAGCTCGAGGACGTGCAAGGCACCGCCTTGGAGCTCCTCGACACGCTCAAAAGGGTCAAGGGTCAGAACAGAGTCCGCGCCCTCAAACAGCTCCGCAAACTCGTCGATTCCCACCTCTCCACCAGGAAAACCGTTGAGGAAAACAACGGGCTCGCTTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCGATTGGGATTCTTGTGAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCAACCCGCTAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACCAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTGTTATCAAGTTTGAGTCTTTTGGTCGGGGTTTTAAGGTTAGTGCGAGATAAAAAACACCCAACAAGCGTTTTAACCGGACTCATATTACTAAAAATTGTGTGTTCGCGTGAATCGGTTAGAAGCACAATTGTAAGCATAGGAGCAGTGCCTCAGCTGATTCAGCTTTTGCCCACTTTGAACCACGAGTGTTTAGAGATAGCCCTCAACATCCTCGAAGTCTTGTCAACACTTCCTGAGGGAAGATTGGCTTTGAAAGAGTGTCCCAATATCATTCCCAGTGTGGTGAAGTTGTTGATGAGAGTCTCAGAGAGTTGCACACAATTCGCATTGTCGATTCTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCAAAAGCTGTTGAAGCAGGGTTGGCGGCGAAGCTACTTCTGGTGATTCAGAGCGGTTGCAACCCGGTACTAAAGCAGAAATCTGCTGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGCATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1284 0.4899 MPPYQEHHLVPTQTTTMKDANATANVSDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNTTLHHFILSWFSQKYLAMKKKLEDVQGTALELLDTLKRVKGQNRVRALKQLRKLVDSHLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNHECLEIALNILEVLSTLPEGRLALKECPNIIPSVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03354 427 Pfam U-box domain 42 112 IPR003613 GO:0004842|GO:0016567
Viun9g03354 427 SMART Ubox_2 45 108 IPR003613 GO:0004842|GO:0016567
Viun9g03354 427 SUPERFAMILY RING/U-box 39 112 - -
Viun9g03354 427 Gene3D - 276 424 IPR011989 -
Viun9g03354 427 CDD RING-Ubox_PUB 43 95 IPR045210 -
Viun9g03354 427 Gene3D - 124 275 IPR011989 -
Viun9g03354 427 ProSiteProfiles U-box domain profile. 41 115 IPR003613 GO:0004842|GO:0016567
Viun9g03354 427 PANTHER WDSAM1 PROTEIN 39 413 IPR045185 GO:0061630
Viun9g03354 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 123 IPR013083 -
Viun9g03354 427 SUPERFAMILY ARM repeat 120 407 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03354 Viun-Chr9 40152985 40155223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03354 28 427 U-box Gene Family AT3G49810 63.750 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03354 - - gmx:100808281 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03354 9 40152985 40155223 Viun9g03354 9 40152985 40155223 ECH