Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03345 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACGGTACCGTTTTGGACTCCACAATCTCCGTAGACCACAGCACCCGGTGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATCAAGCCCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTAAAGAAAGCAATTCCAAGGAGTGAACAACAGCAACACCAAAACCAGTTACACCATAGAGGGGGAGTTAACTATAGTAGTAGTTGTGATTATAGCAGTGACACCAACGTTAGGACTAAAAAGATTTGTGGGGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGCAATACTTCGAGAGGTTTGGTCGAATAACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATTACGTTTGATTCCGAGGAATCGGTTCAAAGCGTTATGGTGAAAAGTTTTCATGACTTGAATGGTAGACAAGTAGAAGTCAAGAGGGCTGTTCCCAAGGAGGGCAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTCCTCCTTACAGTCCTAGGAACATGCTTCCGGGTCTTGTTCCTTTGCCGTGGTATGGTAGTGATGGAGTATATGCCTATGGATCTAATGCTTACGGTTGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTCTGATGCTTCTAGGAACTTCTGGTACGGGCCGATGATGGCTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAACATTGCGTATGTCGGGGGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCAGGCAACACCACATTGCATCATGGTGTAAAGCAGAATGTTGTGGACTCTTCGAGTTTCAAAGGAAGCAATGGTGAAATATCTAGCTGA 1110 0.4667 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFXGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLVPLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSDASRNFWYGPMMAGPQACQVPYASAVPNIAYVGGRIGIVGSGVGSWGYGGILGSATNLKFDQPFIGNGFVPGNTTLHHGVKQNVVDSSSFKGSNGEISS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03345 370 Gene3D - 2 97 IPR012677 -
Viun9g03345 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Viun9g03345 370 SMART rrm1_1 121 193 IPR000504 GO:0003723
Viun9g03345 370 SUPERFAMILY RNA-binding domain, RBD 116 205 IPR035979 GO:0003676
Viun9g03345 370 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Viun9g03345 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Viun9g03345 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Viun9g03345 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Viun9g03345 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 296 - -
Viun9g03345 370 FunFam RNA-binding protein 1 116 206 - -
Viun9g03345 370 Gene3D - 116 204 IPR012677 -
Viun9g03345 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03345 Viun-Chr9 40094947 40096567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03345 12 258 Eukaryotic Initiation Factors Gene Family AT2G36660 23.792 9.88e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03345 K14411 - gmx:100816822 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03345 9 40094947 40096567 Viun9g03345 9 40094947 40096567 ECH