Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03344 ATGAAGGGCATGGACGAGAGGAACACCGATGATGGAAGCAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAACTTGGAGGTTACTTCAGCAGCCACTGTTCCCAACCCCACTGTTCCGACAACCTTCTACATGTCCTCCCCTCACATTTCCACCTCAGGAATCTGTTACGGTGTCGGGGGAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTATCAAGTCTGATGGGTCGCTTTGTATCTTGGAAGCTCTCAATAGATCACAATCGCAAGTGATGACACAAAATTCTACGCCTAAATTGGAGGACTTTCTTGGTGGTGCAACTATGGGAACTCACGAATATGGGAGCCACGAGAGAGGGGCAAATGCAATGGCTCTGAGTCTAGACAGCATCTACTACAGCACCCAAAATGCTCAGGCACAACCCAACAGAGACACACTCTCAGAACCCTTCAGGCAACAAGGGCAAATGAACGTCCAAACGCACCCTTATTACTCAGGACTTGGGTGCCACGGGATGTATCAAGCACAGATAGAGGATGAAGCAACGAAGGAAGCACACGCTTTAGTTTGCAGCTCCCTGATGCCTCAAATGACAGAAGATAGTTTGAAAAACTGGGTTGCTTCAAGGGAATATTCAACTCATCAGCAGGTTTTGGAGCAGCAAATGAACTGTGGAATGGGGAATGAGAGAAGTGGCGTGTCTCTTGGAACTGTGGGGTGTGGCGAGTTACAGTCACTGAGTTTATCTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCACCTTCTGGGCCTGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGTAAAGTTGGGTCAAAAGCAACCAGTGCACAGGAAATCTATCGACACATTTGGCCAGAGAACCTCTCAGTATAGAGGTGTCACCAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTCGGAAAGGAAGACAAGTATATTTGGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCCACGCATATAAACTTTTCGATTGAAAATTACCATGTTGAACTGGAAGAAATGAAGAGCATGAGCAGGCAAGAATACGTTGCACACTTAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGGAACAAGGACCTATACCTTGGGACATTCAGCACACAGGAGGAAGCAGCAGAAGCATACGATGTAGCCGCAATCAAATTTCGCGGCGCAAATGCAGTGACGAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCGAGTATCAATCTTCTGGCCGGTGAGCTCGCCAGGAGAAATAAAGATAATGATCCAAGAAACGAGGCGAGGGATTGCGGTATGAAAAACAATAACAATAACAAGGGTGTGATGACAAGTGAAGGTAGAAACAGCAACGAAAAGGATTCGGAGTGGAAAATGGTTTTGTTTAATGAGGGTTCGCAGCAGCAGCAACAGTCAAATGGCAGTGAGGAAAAAATAATGAAGTGCGGAAATTATAGAAACAGTGCATTTTCTGGGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGAGGAGTGTGGGAAAATTGGGACTCATTTTTCAAACGCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCGAGAGAGGGTAGTCCTGAGAAAACGGGTCCCTCGCTTCTGTTTCCAAAGCCCTCCATGGAAACAAAGATTGTGAACCCCATTAGTACCAGTGTTACGTCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCACCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA 1977 0.4684 MKGMDERNTDDGSNHNWLGFSLSPHMNLEVTSAATVPNPTVPTTFYMSSPHISTSGICYGVGGNGNFHSPLTVMPIKSDGSLCILEALNRSQSQVMTQNSTPKLEDFLGGATMGTHEYGSHERGANAMALSLDSIYYSTQNAQAQPNRDTLSEPFRQQGQMNVQTHPYYSGLGCHGMYQAQIEDEATKEAHALVCSSLMPQMTEDSLKNWVASREYSTHQQVLEQQMNCGMGNERSGVSLGTVGCGELQSLSLSMSPGSQSSCVTAPSGPDSVAVDAKKRGHVKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYHVELEEMKSMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASINLLAGELARRNKDNDPRNEARDCGMKNNNNNKGVMTSEGRNSNEKDSEWKMVLFNEGSQQQQQSNGSEEKIMKCGNYRNSAFSGALQDLIGIDSVEECGKIGTHFSNASSLVTSLSSSREGSPEKTGPSLLFPKPSMETKIVNPISTSVTSWLPSPTVQMRPPPAISLSHLPVFAAWTDT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03344 658 CDD AP2 304 370 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 Pfam AP2 domain 305 363 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 Pfam AP2 domain 407 457 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 FunFam AP2-like ethylene-responsive transcription factor 406 467 - -
Viun9g03344 658 SUPERFAMILY DNA-binding domain 406 467 IPR016177 GO:0003677
Viun9g03344 658 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 538 - -
Viun9g03344 658 SMART rav1_2 407 471 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 SMART rav1_2 305 377 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 MobiDBLite consensus disorder prediction 501 516 - -
Viun9g03344 658 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 MobiDBLite consensus disorder prediction 593 613 - -
Viun9g03344 658 MobiDBLite consensus disorder prediction 489 521 - -
Viun9g03344 658 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700|GO:0006355
Viun9g03344 658 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700|GO:0006355
Viun9g03344 658 CDD AP2 406 467 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700|GO:0006355
Viun9g03344 658 FunFam AP2-like ethylene-responsive transcription factor ANT 304 373 - -
Viun9g03344 658 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03344 Viun-Chr9 40080314 40084254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03344 251 487 AP2-EREBP Transcription Factor Family AT1G72570 72.314 6.23e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun9g03344 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03344 K09285 - gmx:100787223 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03344 9 40080314 40084254 Viun9g03344 9 40080314 40084254 ECH
Viun8g00436 8 3102321 3106896 Viun9g03344 9 40080314 40084254 PCT