Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03333 ATGGGGAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAGGGTCCTTGGTCGCCGGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCTCAGAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGCCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGCTTCTCTGAGGAAGAAGATAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCAGCACAATTGCCAGGAAGAACTGATAACGACATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGCAAGGAACTGCAGGCACGTAACAAAGGAAACGGCGTCGTTAAGCAGGAGAACAATTCCTCACTCTTGCTCCAGGAAAACAGTGTTCAACAACAGCCTTGCTGGCCACAGATTCCGGCGCCGCCACTTTCATCGTACACGAGTCAAACTCCAAGTTTCAACGACCAAGACTCTATTAGGAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATGAACCCATAGGGTTGAATAATGTTCAGTTTCCACAGGGTTCTTTCTCATCAACACAACAAATTCAAGAGGAGCAGGTCCATGTTAGCTCTTCTGGGTGCATGAACTCTATTGGCAATGGCAACAGCCAAGTACAATTTGGTCAGAGTAATAATGAGTACTGTTCTGAGTTGGTGCAAGGAGAAGTGAGTTTCAGTTCCGTAGGTATTGGGGAAATGGTTTCTACTAATGATTATTCTCAAAGGTTATTAGGAGGGTTGGAGTTCTTGTATGGAGAGGAAATGATTAACGATAAGATAATGGGTGGTGGTTGTGCATCTTCATGTTGTGGCCAAACTACTAATTGGGGTGAGACGAGTTCTGTGATGTATCCTCCTCTTGTTGCTTCAAGTTTCGAGGGAGTGATGCCACGACAAAGTGCTTTTCAAGAGTTGAGCTACCCATAG 1029 0.4655 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGVVKQENNSSLLLQENSVQQQPCWPQIPAPPLSSYTSQTPSFNDQDSIRKLLIKLGGRFSDDYEPIGLNNVQFPQGSFSSTQQIQEEQVHVSSSGCMNSIGNGNSQVQFGQSNNEYCSELVQGEVSFSSVGIGEMVSTNDYSQRLLGGLEFLYGEEMINDKIMGGGCASSCCGQTTNWGETSSVMYPPLVASSFEGVMPRQSAFQELSYP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03333 342 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun9g03333 342 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun9g03333 342 Gene3D - 7 68 - -
Viun9g03333 342 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Viun9g03333 342 CDD SANT 71 113 IPR001005 -
Viun9g03333 342 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun9g03333 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun9g03333 342 SMART sant 13 64 IPR001005 -
Viun9g03333 342 SMART sant 67 115 IPR001005 -
Viun9g03333 342 Gene3D - 70 144 - -
Viun9g03333 342 FunFam Transcription factor RAX3 70 146 - -
Viun9g03333 342 CDD SANT 16 62 IPR001005 -
Viun9g03333 342 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Viun9g03333 342 FunFam Transcription factor RAX3 7 68 - -
Viun9g03333 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Viun9g03333 342 PANTHER OS09G0431300 PROTEIN 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03333 Viun-Chr9 39997647 39999362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03333 1 193 MYB Transcription Factor Family AT3G49690 64.904 1.44e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g03333 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03333 K09422 - gmx:100790407 566.229