Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03329 ATGATACCCAACGTTCAAATACCGCTCTGGGACTCCGCCGCCGCAGACGGAGGACCACTATCCCCGTTCTCGCCCATTGCGCCCGACACCGCCACCTTCTCCGGCGATCATTTCCGCATGTTCCACTTCAAGGTCCTCACCTGTCCACGTGGCAGGGCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCATGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGCACTAACTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCCTACCCGAATCGTCCTCTCTTTCCTCTCCCACTTCCGTTATGGGCTCTTCCTTCTTCGATTCACCACCATCTTCTCCTTACGTCCACAACATACAAGACATAGTTAGCTCAATGCGGAATGTTCAACTGGAGGATGGGCTTTTTTCCGGTTTGACCCGCTGCGTGTTCGGGTCGCCAAGTGGCGGTATTTTAAGTGGCAATGGGTGTGACGAAGAAGAGCCTGTTATGGAGAGAGTGGAATCTGGGAGAGACATTAGGGCGAGAATCTACGCAAAGCTTAGCAGGGAGAATTCCATTGCAGGTTCCCAACCGGTGAATGGATTCCGGGGCCTTTGA 756 0.5741 MIPNVQIPLWDSAAADGGPLSPFSPIAPDTATFSGDHFRMFHFKVLTCPRGRAHDWTECPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLLPESSSLSSPTSVMGSSFFDSPPSSPYVHNIQDIVSSMRNVQLEDGLFSGLTRCVFGSPSGGILSGNGCDEEEPVMERVESGRDIRARIYAKLSRENSIAGSQPVNGFRGL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03329 251 PANTHER UNKEMPT FAMILY MEMBER 26 242 IPR045234 -
Viun9g03329 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872
Viun9g03329 251 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Viun9g03329 251 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Viun9g03329 251 Gene3D - 77 140 - -
Viun9g03329 251 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Viun9g03329 251 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03329 Viun-Chr9 39948510 39949894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03329 22 166 C2H2 Transcription Factor Family AT5G12850 54.140 1.55e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun9g03329 zf-CCCH 8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03329 - K23048 gmx:100786368 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03329 9 39948510 39949894 Viun9g03329 9 39948510 39949894 ECH