Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03313 ATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCATGGAGCGCCTGAAGAAGCTCGTGATGAAAATGTGTTAGTGTTTGAAGCAACCAAGCTTCTAAGGGGACTATCCTCTGCTTACTCTAAACAAGGTACCAAAGGGCTCAACCAAGATGCTGCAACACTTTGCCAGGTTTATGGGACGACAAACGCAGCGTTTTGTGGAGTTTTTGATGGGCATGGAAGGAATGGTCACGTAGTGAGTAAAATAGTGAACAACCGTTTGTGTTCACTCATAGTGGACCAGAAAAAAGTGCATGCAAATATTGAAAAAAAGAACAGCATAAGCCATGTGGAGACAGTAGAAGACGAGTCTTCAGCTCTATTAAACAAGAATTTTCAAGAATGGAAAGAAGCCATTCTTGATGGTTTCAGGGTGATGGACAAGGAGGTGAAGTTACAAGAGAATCTGGATTGCTCTTGCAGTGGAACTACGGCTGTGATTGTCATAAGACAGGGTGAAGATCTTGTCATAGCTAACCTTGGTGACTCGAGAGCAATCTTGGGGACAATCTCTGACGGTGAAATCGTGCCCATTCAATTGACCACGGATATGAAACCTGGATTACCTTGCGAAGCAGAACGAATAAAAGGTTGTAATGGGCGTGTATTTGCCCTGAAGGAAGAACCACACATCCAGCGAGTGTGGTTACCAGATGAGAACTCTCCAGGTCTAGCCATGTCTCGGGCTTTTGGGGATTTCATGCTCAAAGACTATGGCATCATTGCCATCCCTGAAATTTCGCATCGCACTCTAACATCTAGCGATCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTGAGCAACAAGGAGGTTTCCTCAATTGTGTGGGCAGCAGACACTGAGAATGAAGCAGCAAGGGCTGTAGTGGAAGCAGCAGTTTTAGCATGGAAAAACAAGTATCCTTCTTCCAAGTTAGATGACTGCACTGCCGTTTGCCTCTTCCTACAGAAGAAGCCACACTTTCTACCCGTCAAAAGTGGAAATCCCTGA 1041 0.4496 MGICISSESSAIHGAPEEARDENVLVFEATKLLRGLSSAYSKQGTKGLNQDAATLCQVYGTTNAAFCGVFDGHGRNGHVVSKIVNNRLCSLIVDQKKVHANIEKKNSISHVETVEDESSALLNKNFQEWKEAILDGFRVMDKEVKLQENLDCSCSGTTAVIVIRQGEDLVIANLGDSRAILGTISDGEIVPIQLTTDMKPGLPCEAERIKGCNGRVFALKEEPHIQRVWLPDENSPGLAMSRAFGDFMLKDYGIIAIPEISHRTLTSSDQFIVLASDGVWDVLSNKEVSSIVWAADTENEAARAVVEAAVLAWKNKYPSSKLDDCTAVCLFLQKKPHFLPVKSGNP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03313 346 ProSiteProfiles PPM-type phosphatase domain profile. 36 332 IPR001932 -
Viun9g03313 346 SMART PP2C_4 29 330 IPR001932 -
Viun9g03313 346 SUPERFAMILY PP2C-like 32 333 IPR036457 -
Viun9g03313 346 CDD PP2Cc 37 332 IPR001932 -
Viun9g03313 346 PANTHER PROTEIN PHOSPHATASE 37 330 IPR015655 GO:0004722|GO:0006470
Viun9g03313 346 Gene3D - 27 335 IPR036457 -
Viun9g03313 346 Pfam Protein phosphatase 2C 109 309 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03313 Viun-Chr9 39879257 39880974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03313 1 335 PP2C-type Phosphatase Gene Family AT5G26010 51.884 2.91e-104 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03313 - - gmx:100795893 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03313 9 39879257 39880974 Viun9g03313 9 39879257 39880974 ECH
Viun8g00476 8 3486662 3489430 Viun9g03313 9 39879257 39880974 PCT