Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03306 ATGGAGAGAGATATGTACATTGCTCCACTGGAGATTTCTGGGCGAGGTGGTACAGTAATAGATGAAATATCTCATCATTCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCACATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCAACAAGTAATGTCCATGCTGGTGCTTGCTTCATTAATCCATCAACTATTGCTGACTCTAGTCCATTAGTTACATCACGGAGAAAGACTATTGTGGGAGATGCCTCAAATCCCATGGCGAACTCTGAGTTTCAAGAGCATTTAGTTGGAGGAGTGCCCCTCACTCCTGCTTCGCTTGCAGCCATTCTTGCTGATAGAATTGGTCTTGAAGAAAATTTGGAGAATTCAGCAGCTCTGGCTCCCTCAATCTTCTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGTATGGTACTTCAAACCCTTTGTCTGGAACTTTTGAGGAGTGTGGTTACAATGAAGTTCCTAGTAAGTGGAATGCTAACAAATTTCATAAAGCTCCGGAGAATGATGGAACTTGTCAGCCCTATTCTTCTATAGCAAACCTGGATCCAAATGAATGGGCAACATCAAACGTTGCAAACATGGCCAATTATGCTCACTATTCCTCTAACTTTAGTAAAGAACTTTCTCTGAGTCTTGCAACATCTACAGCCGCAGGACAGCGCTCAGACGTGACTTGCTCTAATATGACCCCGTGCATGAATGGAACCATTTCCTGCAGTAGTAGTAGGGAACTTTCTATGAATTTGGGTGGTAATAAATATGTACAAATTTCACCAGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTGGAACAGTTAAACTATTCAGCCCCTGGTAATAGAGCAGGTGGGCAGAAGTCAGCTTCAGCGTTTCCACCCAAGAGAAACATCTTGACAGATCACAATGCAAGTTCTGTTTACGAATCTCATGCAGAGTCTCCATTGCAAAGGCAGGCTGCTGAATCTAAGAAAGCCCAACTGCTGGCACTTCTACAACTGGTGGACAATCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCAGCTACCGAGCTGGACCCACAAATACATGCACATTTTGCTCTTCGAACCATCTCTGTCTTTTACAAGGAGTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGTTTCAACAAATCGTGCACGGAAGAGACTGAATGGTCTATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTACAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCGGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCCTACACCCGTATCCCAAAGACGCAGAGAAGCATTTGCTTGCAGTGAAAAGTGGGTTGACTAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCCTGTCGAAATGAAGAAGAAATCCAGAATAACCATGGAAATAGGATAAGCATGAGCAACCAAAGGTTTAATGTTAACTAA 1686 0.4288 MERDMYIAPLEISGRGGTVIDEISHHSTSNPLIQCYSLDLNNQSHIINGISMLSGEQGEPTSNVHAGACFINPSTIADSSPLVTSRRKTIVGDASNPMANSEFQEHLVGGVPLTPASLAAILADRIGLEENLENSAALAPSIFSTGALEVFFNNLYGTSNPLSGTFEECGYNEVPSKWNANKFHKAPENDGTCQPYSSIANLDPNEWATSNVANMANYAHYSSNFSKELSLSLATSTAAGQRSDVTCSNMTPCMNGTISCSSSRELSMNLGGNKYVQISPEVLESRYLLGIQEILAQIARYSFENLEQLNYSAPGNRAGGQKSASAFPPKRNILTDHNASSVYESHAESPLQRQAAESKKAQLLALLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAHFALRTISVFYKELRERISNYILAMGSSFNKSCTEETEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEEIQNNHGNRISMSNQRFNVN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03306 561 ProSiteProfiles 'Homeobox' domain profile. 459 522 IPR001356 GO:0003677
Viun9g03306 561 Gene3D - 465 545 - -
Viun9g03306 561 SMART prehox3 276 420 IPR006563 -
Viun9g03306 561 SMART HOX_1 462 526 IPR001356 GO:0003677
Viun9g03306 561 Pfam Associated with HOX 282 419 IPR006563 -
Viun9g03306 561 CDD homeodomain 462 523 IPR001356 GO:0003677
Viun9g03306 561 Pfam Homeobox KN domain 479 518 IPR008422 GO:0003677|GO:0006355
Viun9g03306 561 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 215 544 - -
Viun9g03306 561 SUPERFAMILY Homeodomain-like 464 531 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03306 Viun-Chr9 39832916 39835844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03306 228 546 Homeobox Transcription Factor Family AT4G32980 54.658 7.90e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun9g03306 POX 5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03306 - - gmx:100820354 919.072