Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03300 ATGACTTCTGTTTCTCTGAACCTACCAGATCAAACTGAACTCTTCATTTCCCCCGATAATCACCATTCAACTCTCTCATGTTACTCCTTCTTCGACATATTAGACCAAAGCCAGACCAAAGATATCAGATACTTAACACATGCTGATCAAGAGGATGTGAAGTTTGTATTTCATGGTGGATCATCAGATAATGAGCAAGTGTGCAATGCATCGTCCACTCAACCTAAGTCGGTTATGGCAGATCCAAATAGCAGCGCGTGTAGCCGCCATAATTTATCCTTCCACAAAATAGAGGATCCAGAGAAGAGAAGAGGAAATTACGGGTATGAAAAATGGTTGTCTTCAAATGTGAGGTTGACGAGAAAAATGATGAGCCCACCTAGCAGCAATAACAGTGATCTAGCCACAAACAAAGCTTTCGATATTATTAGGGTTTGTGCAGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGCGGCATTCGGCAGAGGAAGGCGAGAAGGGCAATGGCAGAAGCGGCGAATGGTTTTGGTCCTTCCAGAGGGCATCATGAAAAGGAAAAGAAGTGTCGTAGAAAGCATTTTGCAGGGTTGAAGAATAAGTCCAAGACTGCAACTAGTGCTACTGGTAGAGGAACATTATCTGAGGAGCAGAAACTGAGGATTGATTTGAAGGACTTTGCCATAAGTTTGAGGGATGATTCAGCTTTGAAGCAAGAGTTTCCAATGGATGAAGTATCTCAGGCAGCGATGCTTCTAATGGATTTATCTAGAGAGGCTTTGTTTACTTATTATAAGTAG 837 0.4277 MTSVSLNLPDQTELFISPDNHHSTLSCYSFFDILDQSQTKDIRYLTHADQEDVKFVFHGGSSDNEQVCNASSTQPKSVMADPNSSACSRHNLSFHKIEDPEKRRGNYGYEKWLSSNVRLTRKMMSPPSSNNSDLATNKAFDIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANGFGPSRGHHEKEKKCRRKHFAGLKNKSKTATSATGRGTLSEEQKLRIDLKDFAISLRDDSALKQEFPMDEVSQAAMLLMDLSREALFTYYK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03300 278 Gene3D - 143 217 IPR013088 GO:0006355|GO:0008270
Viun9g03300 278 Pfam GATA zinc finger 146 179 IPR000679 GO:0006355|GO:0043565
Viun9g03300 278 ProSitePatterns GATA-type zinc finger domain. 146 171 IPR000679 GO:0006355|GO:0043565
Viun9g03300 278 CDD ZnF_GATA 145 182 IPR000679 GO:0006355|GO:0043565
Viun9g03300 278 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 130 270 - -
Viun9g03300 278 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 181 - -
Viun9g03300 278 ProSiteProfiles GATA-type zinc finger domain profile. 144 176 IPR000679 GO:0006355|GO:0043565
Viun9g03300 278 SMART GATA_3 140 191 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03300 Viun-Chr9 39812153 39813437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03300 111 269 C2C2-Gata Transcription Factor Family AT4G26150 34.826 2.12e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g03300 GATA 4.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03300 - - pvu:PHAVU_009G077500g 329.717