Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03291 ATGAAGGGAGGGATAGTGAAAGAGGAAGAAACAATCGCATTTGCAGCTGCTGCTGTTGCTGCTGCTTCTTCATCTTCATCCTCAACTTCCAACCTCTCCCCGCAACCAAGGGAAGGGTTGCACGACGTGGGTCCCCCTCCGTTTCTCACCAAAACCTTCGACGTGGTGGAAGACCCTTCCACCAACGACATCGTTTCGTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGACAGAAGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTGACACAGACGCAGTCACACGAGGGAGGAAGCGGAGCTTGCGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTTTTGATGGCTGAAATTGTGAGGTTGAGGCAGCAACAGCACAATTCAAGGGAGCAATTGTTGTCCATGGAGAGCAGATTGCAGGTCAGCGAGAAGAAACATCAGCAGATGATGACTTTTCTTGCTAAGGCACTCAACAATCAGACTTTTATTCAGCAGTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGCTAGAAGAAAGAGGAGACTAGCTGCTTCCCCAAGCGTGGAGAATTTGCAGCAAGATCCTGTGATTGATGCGGCATTGCCAGTTGAAGAGGAATCCACTAATATTGAGTCTCTTCTCTCAGCTGTTTATGACGATGATCCATTAGAATCAAGCTCTGAACTAGAAGACCCGGCGATGTTAGGTTCAGTTCCTACAACCGGTGGTGGGAGTGATTTGGGGGTTGTAAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTACGAACCATGAGGAGGAAGTTGTAATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG 1131 0.481 MKGGIVKEEETIAFAAAAVAAASSSSSSTSNLSPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQKHLLKTIKRRRHVTQTQSHEGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVRLRQQQHNSREQLLSMESRLQVSEKKHQQMMTFLAKALNNQTFIQQFLHRNAQKIELQGARRKRRLAASPSVENLQQDPVIDAALPVEEESTNIESLLSAVYDDDPLESSSELEDPAMLGSVPTTGGGSDLGVVSDAIWEDLLNQDLVATNHEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHMGYLASKP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03291 376 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03291 376 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03291 376 MobiDBLite consensus disorder prediction 22 44 - -
Viun9g03291 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 34 261 IPR027725 -
Viun9g03291 376 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03291 376 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03291 376 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03291 376 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun9g03291 376 Coils Coil 165 185 - -
Viun9g03291 376 MobiDBLite consensus disorder prediction 22 36 - -
Viun9g03291 376 SUPERFAMILY "Winged helix" DNA-binding domain 44 137 IPR036390 -
Viun9g03291 376 Gene3D - 41 138 IPR036388 -
Viun9g03291 376 FunFam Heat shock transcription factor 1 41 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03291 Viun-Chr9 39733531 39735624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03291 34 376 HSF AT2G26150 51.297 2.88e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun9g03291 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03291 K09419 - gmx:100794605 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03291 9 39733531 39735624 Viun9g03291 9 39733531 39735624 ECH