LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03290	ATGAAGGGAGGGATAGTGAAAGAGGAAGAAACAATCGCATTTGCAGCTGCTGCTGTTGCTGCTGCTTCTTCATCTTCATCCTCAACTTCCAACCTCTCCCCGCAACCAAGGGAAGGGTTGCACGACGTGGGTCCCCCTCCGTTTCTCACCAAAACCTTCGACGTGGTGGAAGACCCTTCCACCAACGACATCGTTTCGTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGACAGAAGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTGACACAGACGCAGTCACACGAGGGAGGAAGCGGAGCTTGCGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTTTTGATGGCTGAAATTGTGAGGTTGAGGCAGCAACAGCACAATTCAAGGGAGCAATTGTTGTCCATGGAGAGCAGATTGCAGGTCAGCGAGAAGAAACATCAGCAGATGATGACTTTTCTTGCTAAGGCACTCAACAATCAGACTTTTATTCAGCAGTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGCTAGAAGAAAGAGGAGACTAGCTGCTTCCCCAAGCGTGGAGAATTTGCAGCAAGATCCTGTGATTGATGCGGCATTGCCAGTTGAAGAGGAATCCACTAATATTGAGTCTCTTCTCTCAGCTGTTTATGACGATGATCCATTAGAATCAAGCTCTGAACTAGAAGACCCGGCGATGTTAGGTTCAGTTCCTACAACCGGTGGTGGGAGTGATTTGGGGGTTGTAAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTACGAACCATGAGGAGGAAGTTGTAATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG	1131	0.481	MKGGIVKEEETIAFAAAAVAAASSSSSSTSNLSPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQKHLLKTIKRRRHVTQTQSHEGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVRLRQQQHNSREQLLSMESRLQVSEKKHQQMMTFLAKALNNQTFIQQFLHRNAQKIELQGARRKRRLAASPSVENLQQDPVIDAALPVEEESTNIESLLSAVYDDDPLESSSELEDPAMLGSVPTTGGGSDLGVVSDAIWEDLLNQDLVATNHEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHMGYLASKP	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03290	376	Pfam	HSF-type DNA-binding	48	137	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun9g03290	376	ProSitePatterns	HSF-type DNA-binding domain signature.	87	111	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun9g03290	376	MobiDBLite	consensus disorder prediction	22	44	-	-
	Viun9g03290	376	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	34	261	IPR027725	-
	Viun9g03290	376	SMART	hsfneu3	44	137	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun9g03290	376	PRINTS	Heat shock factor (HSF) domain signature	99	111	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun9g03290	376	PRINTS	Heat shock factor (HSF) domain signature	48	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun9g03290	376	PRINTS	Heat shock factor (HSF) domain signature	86	98	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun9g03290	376	Coils	Coil	165	185	-	-
	Viun9g03290	376	MobiDBLite	consensus disorder prediction	22	36	-	-
	Viun9g03290	376	SUPERFAMILY	"Winged helix" DNA-binding domain	44	137	IPR036390	-
	Viun9g03290	376	Gene3D	-	41	138	IPR036388	-
	Viun9g03290	376	FunFam	Heat shock transcription factor 1	41	138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03290	Viun-Chr9	39733531	39735626	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03290	34	376	HSF	AT2G26150	51.297	2.88e-120	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun9g03290		HSF_DNA-bind	1.3e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03290	K09419		-	gmx:100794605	562.377