Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03280 ATGTCTCTTGCCGCCCCGCCGCAGAACGTCACAATGGTGGCCGTCGACAAAGACAAGAACAGTGCCAACGCTTTCCGTTGGGCCGTTAATCATCTTGACAACCCCGTCATCATTGCCGTCCATGTCAAGCACAAAAACTTTTCTCATCATGTCACCAATGTGTTTCCACCCGACGAAGATGATGTAGTCAATATTTTCAATTCCTTACGCGGAATGTGTACTCGCAAAGCTGTCATGATGAAAGAAGCCGTAGTCGATGATGCTGATGTTGTGAGAGGACTTCTTGAGTTTGCGAACAGGAATCTCATACATAGTATCGTGGTCGGTGCATCTGCCAAAAACCCTTTGTCAAGTCTCAAAAAACTTAAAGCCTATCAGTGTCAGGATATACCAACAGCCATGATCAAATCAGCTCCGGATTTCTGCTCTGTTTACATAATTTCGAAATTGAAGCTTGTGTCTGCTCGATCAGCGGTACGGTCATTGTCAAAAAATTTAACTACACCGAAATCAATTCCTGTGCCGCCAAGTCCACCCAGTCCAGATGGTGGACCATTAAGGGGACAAATACCTAGAAGCAGGGCCATTTACGAAGGAGCAGCAGAACCAATGAGAGTAATACATGCTAGAGAAAGACCAAAGAGTGCGGGAAATGGTATATCAATAGACCACATTGATATACCCGCTCGTCCACGAAATTGGTCAATGGATGAAAGGGAAATTTCAGGGCTTGGGTTAATGGATTTGAATAGAATTGATTCTGGTATATCAGAATCCCTCCCCGTGTCATCATCTCCTCAATCCTCAAAAGAACTAGAAGCCGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCAGCCAAAAACCAGGCGGAACAGATTCGTCAATGGAAACTGGAAGAGGATCGCAGGGTTGAGGTAGTTAGGATGTCTCAAGAGGCCGCTCTTGCAATTGCAGAAAAGGAGAAGGCTAGAGCCAAAGCTGCAATGGAAGCAGCTGAGGAGGCCAGGAGGAGGGCTGAACAGGAAGCACAGAGAAGAAAGGATGCAGAGGAGAAGGCCAGGGTAGAGGCAGAAGAGAAAGAACGAGCATTATCTACGTTGGCTCAAAATGATACCCGGTATAGAAGATACACCATAGAGGAGATTGAATTGGCCACAGAAAAGTTCTCCCCGTCAAACAAAATTGGTGAAGGTGGATACGGACCTGTGTTTAAAGGCCACCTTGATCACACCCCGGTTGCAATCAAAATTTTAAGGCCCGATGCCTCTCAGGGCATGAAGCAGTTCAACCAAGAGATTGAGGTACTAAGCTGCATTAGACATCCGCATATGGTCCTCCTCCTTGGTGCATGTCCTGAGCATGGATGCTTAGTGTATGAATACCTGGATAATGGTAGCTTAGAAGACAGATTATTCCGGAAAAACAGCAGCAGACCAATTCCATGGAAGAAACGGTTCGAAATATCTGCTGAGATAGCAACTGCACTCCTTTTCCTCCACCAAAACAAGCCAGAACCCATCGTGCACCGAGACCTCAAACCATCCAACATTCTGGTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCACGTTTAGTCCCTCCCTCTGTAGCTGATACTGTGACACAATATTACATGACTTCGGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTATCAACAAACGGGAATTCTAACAACAAAGTCAGATATATATTCTCTGGGGATAATGCTACTTCAGATAATCACAGGCAAGCCTCCAATGGGCCTTGCTCACTTAGTTAGGAAGGCAGTTGAAAAGGGTAGGTTTGAAGAAGTGCTGGACCCTGTGATCACAGATTGGCCTGTGGAAGAGGCTCTATCATATGCCAAATTAGCATTGCAGTGTGCCCAACTCAGCAAGAAGGACAGACCAAATCTTGCAACGGAGGTGTTGCCTGAGCTTACCAGGTTAAGCGAACTTGAATTGCCTCCTCAGAATGATCCATTTTCTTTCAGCAGTGATGATACGATCTATAGCTGTGTTTCACGTTCCCCCACACCTCCGCGAGGTCAATACTCAGATTCAGAGACGTCCAATAGGGTCTAG 2142 0.4585 MSLAAPPQNVTMVAVDKDKNSANAFRWAVNHLDNPVIIAVHVKHKNFSHHVTNVFPPDEDDVVNIFNSLRGMCTRKAVMMKEAVVDDADVVRGLLEFANRNLIHSIVVGASAKNPLSSLKKLKAYQCQDIPTAMIKSAPDFCSVYIISKLKLVSARSAVRSLSKNLTTPKSIPVPPSPPSPDGGPLRGQIPRSRAIYEGAAEPMRVIHARERPKSAGNGISIDHIDIPARPRNWSMDEREISGLGLMDLNRIDSGISESLPVSSSPQSSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEDRRVEVVRMSQEAALAIAEKEKARAKAAMEAAEEARRRAEQEAQRRKDAEEKARVEAEEKERALSTLAQNDTRYRRYTIEEIELATEKFSPSNKIGEGGYGPVFKGHLDHTPVAIKILRPDASQGMKQFNQEIEVLSCIRHPHMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNSSRPIPWKKRFEISAEIATALLFLHQNKPEPIVHRDLKPSNILVDRNYVSKISDVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQQTGILTTKSDIYSLGIMLLQIITGKPPMGLAHLVRKAVEKGRFEEVLDPVITDWPVEEALSYAKLALQCAQLSKKDRPNLATEVLPELTRLSELELPPQNDPFSFSSDDTIYSCVSRSPTPPRGQYSDSETSNRV 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03280 713 PANTHER OS02G0152300 PROTEIN 11 676 - -
Viun9g03280 713 FunFam Os07g0541700 protein 476 565 - -
Viun9g03280 713 ProSiteProfiles Protein kinase domain profile. 403 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03280 713 Pfam Universal stress protein family 12 118 IPR006016 -
Viun9g03280 713 Pfam Protein kinase domain 406 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03280 713 Coils Coil 269 289 - -
Viun9g03280 713 MobiDBLite consensus disorder prediction 171 185 - -
Viun9g03280 713 Gene3D Phosphorylase Kinase; domain 1 372 475 - -
Viun9g03280 713 SMART serkin_6 403 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03280 713 CDD STKc_IRAK 409 669 - -
Viun9g03280 713 CDD STK_N 10 149 - -
Viun9g03280 713 MobiDBLite consensus disorder prediction 345 371 - -
Viun9g03280 713 SUPERFAMILY Protein kinase-like (PK-like) 384 659 IPR011009 -
Viun9g03280 713 MobiDBLite consensus disorder prediction 166 190 - -
Viun9g03280 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Viun9g03280 713 Coils Coil 322 384 - -
Viun9g03280 713 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 118 - -
Viun9g03280 713 Gene3D HUPs 11 125 IPR014729 -
Viun9g03280 713 Gene3D Transferase(Phosphotransferase) domain 1 476 679 - -
Viun9g03280 713 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 475 - -
Viun9g03280 713 MobiDBLite consensus disorder prediction 692 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03280 Viun-Chr9 39646039 39649506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03280 80 672 Receptor kinase-like Gene Family AT5G12000 57.492 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun9g03280 Pkinase 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03280 - - gmx:100798861 1051.58