Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03262 ATGGACGCAGCCGGAGGAGCTCCCTACAATCCCCGTTCCGTCAACGAGGTCTTCCGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCCCTCACCACCGATGTTGAATTGTTCTACCAGCAGTGTGATCCAGATAAGGAAAATCTTTGCCTTTATGGATTTCCTAACGAGCACTGGGAAGTCAATCTACCTGCTGAGGAGGTTCCGCCAGAGCTTCCAGAACCAGCACTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCCGTGCACAGTGATACATGGTTAATTTCTGTGGCTATGTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGAGTCTTTTTAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTGCTGGGAAGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTCTCTAATCATGACAATAACAAATCTAAATCAAACTCTAAGAGAGGTTCTGAATCACAAGAAAAGTATTCAAAATCAATGCAACCAAAGGATGAGGGTGCTTTGGCAAAGGACGATGAAGAGCATGGAGAGGCACTGTGTGGGGCATGTGGAGAGAACTATGCACTTGATGACGAGTTCTGGATTGGTTGTGACATTTGTGAGGGGTGGTTTCATGGGAAATGTGTGAGGATTACCCCTGCGAAGGCTGAGAGTATCCAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGTTCGTCAATAG 762 0.4541 MDAAGGAPYNPRSVNEVFRDFKGRRAAIVKALTTDVELFYQQCDPDKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDTWLISVAMYFGARFGFDKADRKSLFSMINDLPTIFEVVAGKAKKQGKEKSSVSNHDNNKSKSNSKRGSESQEKYSKSMQPKDEGALAKDDEEHGEALCGACGENYALDDEFWIGCDICEGWFHGKCVRITPAKAESIQQYKCPSCSNKRVRQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03262 253 PANTHER CPG BINDING PROTEIN 10 253 IPR045104 GO:0006355|GO:0042393
Viun9g03262 253 ProSiteProfiles Zinc finger PHD-type profile. 196 249 IPR019787 -
Viun9g03262 253 SMART PHD_3 198 247 IPR001965 -
Viun9g03262 253 ProSitePatterns Zinc finger PHD-type signature. 199 246 IPR019786 -
Viun9g03262 253 MobiDBLite consensus disorder prediction 146 190 - -
Viun9g03262 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 248 IPR013083 -
Viun9g03262 253 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Viun9g03262 253 Pfam PHD-finger 199 249 IPR019787 -
Viun9g03262 253 CDD PHD_AL_plant 198 249 IPR044104 -
Viun9g03262 253 SUPERFAMILY FYVE/PHD zinc finger 190 250 IPR011011 -
Viun9g03262 253 FunFam PHD finger alfin-like protein 191 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03262 Viun-Chr9 39528586 39531839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03262 4 252 Alfin-like Transcription Factor Family AT3G42790 70.916 1.04e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Viun9g03262 Alfin 8.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03262 K26274 - pop:7476667 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03262 9 39528586 39531839 Viun9g03262 9 39528586 39531839 ECH