Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03261 ATGGAGGCAGCCGGAAGAGCTCCGTCGACTCACCCTTCCGTCGAAGAAGTCTTCCTAGATTTCAAGGGCCGCAGAACTGCCATTGTTAAGGCCCTCACCACTGAGTACAAAGACTTCTTTCAGCAATGTGATCCAGCGAAGGATGATCTTTGTCTTTATGGATTTCCTAACGAAGTCTGGCAAGTCGATCTACCTGCTGAGGAGGTGCCTGCAGAGATCCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAGGGACTGGGTATCCTTTGTTGCTGCACACAGTGATACATGGTTAATAGCTGTGGCTATGTTTTTTGGTGCAAGATTTGGGTTTGATAAGGCTGATAGGGGTCGTCTTTTTGATATGATAAATGATCTTCCAACAGTATTTGAGGTTGCTGTTGGGAAGGTCAAGAAAGAAGGAAAGAAAAAGCCACCAGTTTCTAATCATAGCAACAGCAAATCTAAATCAAACTCCAAGAGAGGTTCCGAATCTCAAAGAAAGAATTCAAAAGCAATGGAATCAAAGGAAGAAGAGCAGGGAGAGACAGCTTGTGGGGCATGTGGAGAGAACGATGCGGCTGGTGTTGATGGATTCTGGATTTGCTGTGACATTTGTGAAAGGTGGTTTCATGGGAAATGTGTGAAGATTACCCGTGCTAAGGCTGACTTTATCAAGCATTACAAATGTCCAACTTGCAGCATCAAGAAGCTCGTCAATTGTAGCTTCAAGTTATAA 756 0.4444 MEAAGRAPSTHPSVEEVFLDFKGRRTAIVKALTTEYKDFFQQCDPAKDDLCLYGFPNEVWQVDLPAEEVPAEIPEPVLGINFARDGMEERDWVSFVAAHSDTWLIAVAMFFGARFGFDKADRGRLFDMINDLPTVFEVAVGKVKKEGKKKPPVSNHSNSKSKSNSKRGSESQRKNSKAMESKEEEQGETACGACGENDAAGVDGFWICCDICERWFHGKCVKITRAKADFIKHYKCPTCSIKKLVNCSFKL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03261 251 Pfam Alfin 13 139 IPR021998 GO:0006355|GO:0042393
Viun9g03261 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 240 IPR013083 -
Viun9g03261 251 ProSiteProfiles Zinc finger PHD-type profile. 188 242 IPR019787 -
Viun9g03261 251 PANTHER CPG BINDING PROTEIN 13 243 IPR045104 GO:0006355|GO:0042393
Viun9g03261 251 SMART PHD_3 190 240 IPR001965 -
Viun9g03261 251 MobiDBLite consensus disorder prediction 146 184 - -
Viun9g03261 251 SUPERFAMILY FYVE/PHD zinc finger 180 243 IPR011011 -
Viun9g03261 251 ProSitePatterns Zinc finger PHD-type signature. 191 239 IPR019786 -
Viun9g03261 251 FunFam PHD finger alfin-like protein 183 241 - -
Viun9g03261 251 MobiDBLite consensus disorder prediction 166 184 - -
Viun9g03261 251 Pfam PHD-finger 191 240 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03261 Viun-Chr9 39523000 39525681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03261 4 243 Alfin-like Transcription Factor Family AT3G42790 59.036 6.75e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g03261 Alfin 2.5e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03261 K26274 - mnt:21387296 316.235