Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03255 ATGCTTCATCGCTCATTGCCTCCTCCTACACGGATCGACAACATGAATCTAAGTGAGAGCCCAACTACTCGCCACAACCTTTCTCGCCAATCATCGAAATCCAAAAGTGGTGGATGTTGTCGAGGCTTCAGCAGCGTCAGAACCGTGTCATCCACCGCACCAACCTTGCAACACCATCACCTTCAGCAGCTTTACCAAAAATTGGAACTAAAGGTGGCAGGTTTGGAAAAAGAGGTGCAGAGGCAGACAGAACTGCGCGTTATGTACAGGAAAAGAATGGAAAAGACGCAGGATTACTTGAAATACTGTCTCCAAATAGCACAGCAAAATGGAATCTTGGACCTCATTATCCACTCAAACGGTGAAGTCTCGCAATCTTCCATTTCTTCTCCACGTGCACTCAACTCCACTCTCACTCCTTCGCACAACCATCCCAACCTGATACCCATCGTTGATCAAGCCAAAATCAATGGATGGTTCATCAACCCCAGTGAGTTTTGCAGTGATGAACAGATCCAGCTGGGAGAAAAAATAGGGCAGGGAACCACGGCGGAGATTCACAGAGGGACGTGGCGCGGATTTGATGTGGCGGTGAAGTGCATGTCCGATTCATTCTTCAGCAAAAACGAAAACGGCGTCATATTCTTCGCTCAGGAGGTTGAAACCCTCTCGAAGCAGCGTCACCGGTTTGTGCTTGACCTCATGGGTGCGTGTCTGGACCCTCCGCATCATGCATGGGTGGTTACCGAGTATCTGAACACCACGCTCAAGGAGTGGCTACATGGGCCGGGGAAAAGGCCCAAACACAGAACCACCCCACTTCCTCCCTTGAAAGAGAGGGTGATGCGGGCCCTGGAAATAGCCCAAGGCATGCAGTACCTCCACGAACAAAAGCCCAAGGTCATTCATCGGGACTTGAAGCCCAGCAACATCTTCTTGGACGATGCGCTGCATGTGAGAGTTGCGGATTTTGGTCACGCGCGGTTCTTGGATGATGACGAAATGGCCCTCACCGGAGAAACAGGAACGTACGTGTACATGGCACCGGAGGTAATTCGGTGCGAGCCCTATGATGAAAAATGTGATGTATACAGTTTTGGGATCATACTCAACGAGTTACTCACCGGAAACTACCCTTATATTGAGACACAACTTGGTCCCGCCAAGATTGCTATGGAAGTTGTGGAGGATGAGCTAAGGCCTTTACTTGCATCAAAGGACGATGGTGAGGAAATGGAAGAACTGATTGACCTAATATGCCTTTGCTGGAATGCAAGCCCATCCACTCGACCATCCTTTGCAACAATTAGTCATACCCTCAAATCTTATGTTGAGAGCCTCCTTCAAATTTCAAATTAA 1359 0.4901 MLHRSLPPPTRIDNMNLSESPTTRHNLSRQSSKSKSGGCCRGFSSVRTVSSTAPTLQHHHLQQLYQKLELKVAGLEKEVQRQTELRVMYRKRMEKTQDYLKYCLQIAQQNGILDLIIHSNGEVSQSSISSPRALNSTLTPSHNHPNLIPIVDQAKINGWFINPSEFCSDEQIQLGEKIGQGTTAEIHRGTWRGFDVAVKCMSDSFFSKNENGVIFFAQEVETLSKQRHRFVLDLMGACLDPPHHAWVVTEYLNTTLKEWLHGPGKRPKHRTTPLPPLKERVMRALEIAQGMQYLHEQKPKVIHRDLKPSNIFLDDALHVRVADFGHARFLDDDEMALTGETGTYVYMAPEVIRCEPYDEKCDVYSFGIILNELLTGNYPYIETQLGPAKIAMEVVEDELRPLLASKDDGEEMEELIDLICLCWNASPSTRPSFATISHTLKSYVESLLQISN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03255 452 ProSitePatterns Protein kinases ATP-binding region signature. 178 199 IPR017441 GO:0005524
Viun9g03255 452 MobiDBLite consensus disorder prediction 11 40 - -
Viun9g03255 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Viun9g03255 452 Pfam Protein kinase domain 174 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03255 452 Coils Coil 58 85 - -
Viun9g03255 452 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 441 - -
Viun9g03255 452 Gene3D Transferase(Phosphotransferase) domain 1 253 449 - -
Viun9g03255 452 SUPERFAMILY Protein kinase-like (PK-like) 152 438 IPR011009 -
Viun9g03255 452 Gene3D Phosphorylase Kinase; domain 1 167 252 - -
Viun9g03255 452 ProSiteProfiles Protein kinase domain profile. 172 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03255 452 CDD STKc_MAP3K-like 178 440 - -
Viun9g03255 452 SMART serkin_6 172 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03255 452 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03255 Viun-Chr9 39497899 39499966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03255 170 441 MAP Kinase Kinase Kinase AT5G11850 38.462 3.39e-46 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Viun9g03255 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03255 - - vum:124826171 816.994