Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03254 ATGGATGCTAATTTTAAGAAGGAAGGTCTTCACGGCGGCGAGGTGAGCTTGGGGGAGAAGAAAAGGGAAGTTACGGTGGCGATTCCATATGAGGGTGGTGGTGAATCTTTGATGCCAAAGCAACAGAGCAGGGGGAATTCGCCTCACAGAATGTTAAACGACAACGAGTTTGCTGCAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGATTCCCGTTTCCAGCGCCAATCTCACCCGGAGAAAATCACTCACGAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCTGTTGATGGGACTCTTTTGGAAGAGAATGGTACCTCAACTTTGCAAGAAAATTTGGGTGTTGGTTCACCGTATAAAGCATCGCCTATTAACAATAAACCTGGAACTGTTAATAGAACAGTCTCCATCCTTTCTGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCGGGCCCGGCTGGCGGGGAGGATTTCGATGAAATCATTTACAGAAAAGTTGAATTGAGTAAAAGCAAACGTAGTAGGAGAGTGACGGCTAAGGTTTTGTTTGAATGGTTTGTGTTCGTGTGCCTTACAAGTAGCTTGGTGGCTAGTTTAACAGTTGGAAAACTTAAAAGAACAGAGATTTGGGGTTTGGGGATTTGGAGATGGTGTGTGCTTGTGATGGTGACCTTTTGTGGAATGTTGGTTACAAGATGGTTCATGCGCATTGTTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGTCTGAAGAAGTGTGTCAAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGGGGGGTGGATCGATCTGAATTGGCCACAAAGATTTTGAATGGGGTAACAAGGACTCTTGCTTCCCTCCTCATTGGAGCTTTCCTGTGGTTCATGAAGACATTGCTGCTGAAGATCTTGGCGTCAAATTTTCATGTTAAATCTTTCTTTGATCGAATTCAGGAGTCGCTTTTCCACCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGATTGGGAAATCAGTCAGTGTTGGTCACTTCAGTTTCAGGAGTACAGATGGGAAGGGTGGAATGAAGAAAGAGACTATTGATATTGCAAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCATGGACTATGAAGGTTTTGGTAGATGCAATGACAAATTCAGGGCTATCCACAATCTCTAGTGCACTAGATGAAACTTTTGATGATGGAGAAAATGAACAGACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATCACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGACGAGGATGAACTACGGAGGTTCATGATTAAGGAAGAAGTGAGGATGGTATATCCCCTACTGGCTGAACCAGAAACGGGTCAGATTACAAGGAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGCGACACCAAAACTGCTGTGAGACAACTAAACAAGCTCGTGACGGTAATCCTAATAGTGGTGACCGTAATCGTGTGGCTTCTACTTATGGAGATTGCAACAACAAAAGTACTCGTGTTTCTATCTTCCCAGCTGGTACTTGCAGCTTTCATGTTTGGAAACACTTGTAAGAACATATTTGAAGCTATTATCTTCGTGTTTGTGATGCATCCATTTGATGTTGGTGATCGATGTGTTGTTGATGGGGTTGAGCTATTGGTTGAAGAAATGAACATATTGAACACAGTGTTCTTGAAGCTTAACAATGAAAAAGTGTACTATCCAAATTCTTTGTTGGCCATGAAACCGATTAGCAACTATTACAGAAGCCCAGATATGGGTGACCGTGTAGAGTTCTCAATTGATTTTACAACACCAGCTGAGAAAATTGGGGCACTGAGAGAAAGAGTAAAGAGGTACCTGGAGAGAAACCCACAGTACTGGCACCCAAATTATGGCTTAGTAGTGAAGGACATTGAAGACGTAAACAAGATCAAGATGGGTATATACGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGAGAAGAACAGAATTGGTGATGGAAATAAAGAAGATATTTGAAGAACTCAACATCAGATACAACCTTCTTCCACAAGGCATTCATCTCAGACATATGGAGCCAGAGCCTAGGGTGCTCAATACATGA 2322 0.4324 MDANFKKEGLHGGEVSLGEKKREVTVAIPYEGGGESLMPKQQSRGNSPHRMLNDNEFAAKSPPLNCASPEIRFMPSPNKPPKIPVSSANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGTSTLQENLGVGSPYKASPINNKPGTVNRTVSILSVITPKTPLMASPGPAGGEDFDEIIYRKVELSKSKRSRRVTAKVLFEWFVFVCLTSSLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIVVFLIETNFLLRKKVLYFVHGLKKCVKFFIWLGLVLLTWVLLINRGVDRSELATKILNGVTRTLASLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKIGKSVSVGHFSFRSTDGKGGMKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSGLSTISSALDETFDDGENEQTDKEITNEMEATAAAYHIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEPETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVRQLNKLVTVILIVVTVIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILNTVFLKLNNEKVYYPNSLLAMKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALRERVKRYLERNPQYWHPNYGLVVKDIEDVNKIKMGIYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQGIHLRHMEPEPRVLNT 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03254 773 MobiDBLite consensus disorder prediction 1 26 - -
Viun9g03254 773 SUPERFAMILY Sm-like ribonucleoproteins 595 654 IPR010920 -
Viun9g03254 773 Gene3D - 605 654 IPR023408 -
Viun9g03254 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 86 767 IPR016688 -
Viun9g03254 773 MobiDBLite consensus disorder prediction 95 115 - -
Viun9g03254 773 PIRSF Memb_At2g17000 20 772 IPR016688 -
Viun9g03254 773 Pfam Mechanosensitive ion channel 545 751 IPR006685 GO:0016020|GO:0055085
Viun9g03254 773 MobiDBLite consensus disorder prediction 1 64 - -
Viun9g03254 773 FunFam Predicted mechanosensitive ion channel 605 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03254 Viun-Chr9 39492316 39496080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03254 59 761 Mechanosensitive Ion Channel Family AT5G12080 59.689 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03254 K22048 - gmx:100803107 1349.73