Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03238 ATGGCTACTTGTCTCTTCAGATTTCCTCTCACCTTGCAACCCAAGCTCTGCTTCAATTACACGCCCAACCATGCCGTTCAATTCATTTGTCCGACCAGACGACGTCGCAACCGCCACCGTCATGAGATTTTCCGTCCATCATTCGCAGTATCCAGCTCCTTCCGGACCGAGATTAGCTCACCGGAATCAGTTCTTATCGGAGTCCAGAGAGAGAAAAAAGACTCGCCAGTTCTGCTTGACGTCACCGGCATGATGTGCGGTGCGTGCGTCTCCCGAGTCAAAAGCATCCTGTCCGCTGACGAACGAGTCGACTCGGTCGTGGTCAACATGCTGACCGAGACCGCTGCCGTTAATCTGCGCCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCTCACGGAGACTGAGCGACTGCGGATTTCCGACGAAGCGGAGAGCGTCGAGTTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAATTGGTCGCTAAGAGTCGAAGCCGCGTCGCGTTCGCTTGGACATTGGTCGCATTGTGCTGCGGGTCGCACGCTTCGCATATCTTTCACTCTCTGGGGATCCACATTGGTCATGGATCGCTTTTGGACATTCTTCATAGTTCGTACGTGAAAGGTGGTTTAGCTTTGGGGGCTCTATTGGGACCAGGACGAGAATTACTCTTTGATGGCCTAAATGCGTTTAAGAAGGGGTCGCCTAACATGAACTCTCTCGTGGGATTTGGTTCTATAGCTGCATTCATCATTAGTTCCATCCCGTTACTTAACCCCGGCCTAGCATGGGATGCATCGTTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATCCAGGCATCTAGCGATATGAATGAACTGCTTTCACTTATATCTACTCAATCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAAGGTTATTTCGGGAAGAAGTGTTGTAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGCCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGTTCCAACACTGTGATATCGAAGATTGTACGCATGGTTGAGGAAGCTCAATCACGTGAAGCACCAGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTGTTGGATCACAGATATTTCCTGATGTTTTGCTCAATGACATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAACTGTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCATTGGGTCTTGCTACGCCCACAGCAATCCTGGTTGGCACTTCACTTGGAGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCCAGAATAAACTATATTGCTCTAGACAAGACAGGAACCCTGACAAGAGGAAAACCAGTTGTGTCGGCCATAGGCTCTATCCATTATGAAGAGTCTGAAATTCTTCGGATTGCTGCTGCAGTGGAGAAGACTGCATCTCACCCAATAGCAAAGGCTATTATCAATAAAGCTGAGTCATTGGAGTTGATCCTTCCTGTCACAAAGAGACAGTTAGTCGAACCAGGTTTTGGTACTTTAGCAGAAGTAGATGGCCATTTGATTGCTGTTGGGTCTTTGGAATGGGTTCATGAACGCTTCCAAACAATAGTAAATCCGTCTGATTTGACAAATCTGGAACATAGTTTGGTGAGTCATTCATCAAATACAACATCTTCTAAGTATTCGAAAAGCGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATAGCTGATACTGTGCGTGAAGATGCTGAATCTACTGTAATGAGGCTCAACCAGAAGGGGATTAAAACGGTCCTCTTGTCAGGAGACAGGGAAGAAGCAGTTGCAACAGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTAGGTTTATTTCCTCTCTAAAAGCTGCCGGACATCATGTTGCGATGCTCCAAACCAAAATGCTTTCTGTAAAAGCATAA 2304 0.464 MATCLFRFPLTLQPKLCFNYTPNHAVQFICPTRRRRNRHRHEIFRPSFAVSSSFRTEISSPESVLIGVQREKKDSPVLLDVTGMMCGACVSRVKSILSADERVDSVVVNMLTETAAVNLRRIEEEPASVAESLSRRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVAKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIGHGSLLDILHSSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSIPLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTVISKIVRMVEEAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSQIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLARINYIALDKTGTLTRGKPVVSAIGSIHYEESEILRIAAAVEKTASHPIAKAIINKAESLELILPVTKRQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTIVNPSDLTNLEHSLVSHSSNTTSSKYSKSVVYVGREGEGIIGAIAIADTVREDAESTVMRLNQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSRFISSLKAAGHHVAMLQTKMLSVKA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03238 767 PRINTS P-type cation-transporting ATPase superfamily signature 545 559 - -
Viun9g03238 767 PRINTS P-type cation-transporting ATPase superfamily signature 378 392 - -
Viun9g03238 767 PRINTS P-type cation-transporting ATPase superfamily signature 681 692 - -
Viun9g03238 767 PRINTS P-type cation-transporting ATPase superfamily signature 703 713 - -
Viun9g03238 767 Gene3D - 301 432 - -
Viun9g03238 767 Pfam E1-E2 ATPase 331 525 - -
Viun9g03238 767 SUPERFAMILY Calcium ATPase, transmembrane domain M 281 539 IPR023298 -
Viun9g03238 767 FunFam Copper-transporting ATPase PAA2, chloroplastic 556 689 - -
Viun9g03238 767 PANTHER ATP7, ISOFORM B 71 757 - -
Viun9g03238 767 SUPERFAMILY HMA, heavy metal-associated domain 77 120 IPR036163 GO:0046872
Viun9g03238 767 Pfam Heavy-metal-associated domain 79 142 IPR006121 GO:0046872
Viun9g03238 767 SUPERFAMILY Calcium ATPase, transduction domain A 338 428 IPR008250 -
Viun9g03238 767 CDD HMA 79 143 IPR006121 GO:0046872
Viun9g03238 767 Gene3D - 536 757 IPR023214 -
Viun9g03238 767 ProSiteProfiles Heavy-metal-associated domain profile. 75 145 IPR006121 GO:0046872
Viun9g03238 767 Pfam haloacid dehalogenase-like hydrolase 541 757 - -
Viun9g03238 767 CDD P-type_ATPase_HM 177 757 - -
Viun9g03238 767 FunFam Copper-transporting ATPase 1, putative 301 432 - -
Viun9g03238 767 NCBIfam heavy metal translocating P-type ATPase 249 757 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun9g03238 767 Gene3D - 556 689 IPR023299 GO:0000166
Viun9g03238 767 SUPERFAMILY HAD-like 533 757 IPR036412 -
Viun9g03238 767 NCBIfam HAD-IC family P-type ATPase 330 757 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun9g03238 767 Gene3D - 68 148 - -
Viun9g03238 767 ProSitePatterns E1-E2 ATPases phosphorylation site. 547 553 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03238 Viun-Chr9 39412021 39418994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03238 231 758 Primary Pumps ATPases AT5G44790 34.783 2.16e-80 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03238 K17686 - gmx:100127402 1249.19