Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03236 ATGAAACAACTGGAAAATCTAATCTTGAAAAATAATCAGCTCATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCGCAGAACAATCTCAGTGGGGATATACCAAGACTTATATACTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGATAACAATTTGTCGGGTTCACTTTCTCCAGACATATGCCAGTTAACTGGATTGTGGTATTTTGACGTGAGAAACAATAGCTTGACAGGCAGCATTCCGGAAAGCATAGGCAATTGTACTGGTTTCGAGATCTTGGATTTATCTTACAACAAGCTATCTGGAGAGATACCATTCAATATTGGTTTCCTGCAAGTAGCTACTCTGTCATTGCAAGGCAATAAACTCTCAGGTTATATTCCACCAGTTATTGGTCTGATGCAAGCCCTTACTGTGTTAGATTTGAGCTGTAACATGCTAAGTGGGCCAATCCCTTCTATACTGGGAAATTTGACCTACACAGCAAAACTGTATTTGCATCGAAACAAGCTGACTGGTCTCATCCCCCCGGAGCTCGGAAATATGACAAAGCTTCACTATTTGGAATTGAATGATAACCATTTAAGTGGACAAATTCCGCCCGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCCAATAACAACCTTGAGGGTCCAATTCCCGAGAATCTCGGCTCGTGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGATGAGTGGAACAATTCCCTCATCTTTTCAAACCTTGGAGAGTATGACCTATCTGAATCTTTCTTCAAACAATTTTCAAGGGTCTATTCCAATTGAACTTTCACGGATTGGAAATTTGGATACACTGGATATATCAAATAATAATATAGTTGGTTCCATTCCTTCTTCCATTGGTGATTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGCTTTATTCCGGCAGAATTTGGTAATCTAAGAAGTGTCATGGATATTGACCTTTCAAATAATCAACTCTCTGGCTTGATCCCTCAAGAACTTAGTCAGCTTCAGAACATGATATCTTTGAGACTAGAAATGAACAAATTATCTGGGGATGTATCTTCGCTTGTAAATTGCCTTAGTCTTTCATTGATTAATGTATCTTACAACAATTTAGTTGGTGTTATTCCCACAAGCAACAACTTTTCCAGGTTTCCTCCTGATAGTTTTATTGGAAACCCTGGTCTCTGTGGCTATTGGCTGGATTCATCTTGTCAAGGGTCTCACCCTACCGAGCGAGTTAACTTGTCTAAGGCAGCTATCCTAGGAATTGCTCTAGGTGCCCTTGTGATTCTTTTCATGGTACTCTTTGCAGCTTGCCGACCACACAATCCAGCTCCTTTCCCTGAAGGATCTTTTGACAAACCAGTTAATTACTCACCTCCGAAGTTAGTGATTCTTCACATGAATATGGCACTTCATGTATATGATGATATAATGAGGATGACAGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCAAGTACAGTTTACAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTCTATTCCCACTACCCCCAATGCTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCTCTGTCTCCATTTGGAAACCTCCTCTTTTATGATTACATGGAAAATGGAAGTCTGTGGGATCTTCTACATGGACCTACCAAGAAGAAAAAACTTGATTGGAATGTTCGTCTAAAAATAGCACTTGGATCAGCACAAGGGCTCGCTTATCTACACCATGATTGCTGTCCACGTATCATTCACAGGGATGTGAAATCATCTAATATATTACTAGACAAAGACTTGGAGCCCCATCTCACCGATTTTGGCATTGCAAAGAGTCTATGTCCTTCTAAGTCCCACACTTCAACTTACATAATGGGCACAATTGGCTACATAGACCCCGAGTATGCAAGAACTTCTCGTCTCACTGAGAAGTCTGATGTGTATAGCTACGGTATTGTATTACTAGAGCTGCTAACTGGGAGGAAAGCTGTGGAAAACGAATCAAACCTTCATCATCTGATTTTGTCCAAGACAGCTAATGATGCTGTAATGGAAACCGTTGACCCAGATATCAGTGCCACATGCAAGGACATGGGAGCAGTGAAAAAGGTTTTTCAGCTTGCTCTTTTGTGCACCAAGAAGCAACCAGTGGATAGACCCACAATGCACGAGGTGACGCGCGTGCTGGGGAGTCTAGTGCCACCAAAAGACTCAGCCCCAATGCAAGTACTCTTACCTCATTCACAGCCATCTGCAAAAATGCAATCATACAAGGATGAATACGCCAATCTTAAAGCTCCACACTTGGTCAACTGTCCCTCCATCAGCACCTCTGATGCGCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGCGAGTGA 2529 0.4136 MKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGDIPRLIYWNEVLQYLGLRDNNLSGSLSPDICQLTGLWYFDVRNNSLTGSIPESIGNCTGFEILDLSYNKLSGEIPFNIGFLQVATLSLQGNKLSGYIPPVIGLMQALTVLDLSCNMLSGPIPSILGNLTYTAKLYLHRNKLTGLIPPELGNMTKLHYLELNDNHLSGQIPPELGKLTDLFDLNVANNNLEGPIPENLGSCKNLNSLNVHGNKMSGTIPSSFQTLESMTYLNLSSNNFQGSIPIELSRIGNLDTLDISNNNIVGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPQELSQLQNMISLRLEMNKLSGDVSSLVNCLSLSLINVSYNNLVGVIPTSNNFSRFPPDSFIGNPGLCGYWLDSSCQGSHPTERVNLSKAAILGIALGALVILFMVLFAACRPHNPAPFPEGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPFGNLLFYDYMENGSLWDLLHGPTKKKKLDWNVRLKIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDKDLEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVENESNLHHLILSKTANDAVMETVDPDISATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPPKDSAPMQVLLPHSQPSAKMQSYKDEYANLKAPHLVNCPSISTSDAQLFLKFGEVISQNSE 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03236 842 SUPERFAMILY L domain-like 2 207 - -
Viun9g03236 842 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 586 786 - -
Viun9g03236 842 ProSiteProfiles Protein kinase domain profile. 510 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03236 842 ProSitePatterns Protein kinases ATP-binding region signature. 516 539 IPR017441 GO:0005524
Viun9g03236 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Viun9g03236 842 Pfam Leucine rich repeat 222 277 IPR001611 GO:0005515
Viun9g03236 842 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Viun9g03236 842 Pfam Leucine rich repeat 290 349 IPR001611 GO:0005515
Viun9g03236 842 Gene3D Transferase(Phosphotransferase) domain 1 586 788 - -
Viun9g03236 842 SUPERFAMILY Protein kinase-like (PK-like) 487 776 IPR011009 -
Viun9g03236 842 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 481 585 - -
Viun9g03236 842 Gene3D Phosphorylase Kinase; domain 1 483 585 - -
Viun9g03236 842 SMART serkin_6 510 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03236 842 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 49 159 - -
Viun9g03236 842 SUPERFAMILY L domain-like 166 423 - -
Viun9g03236 842 Pfam Protein kinase domain 513 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03236 842 SMART LRR_typ_2 144 168 IPR003591 -
Viun9g03236 842 SMART LRR_typ_2 336 359 IPR003591 -
Viun9g03236 842 SMART LRR_typ_2 25 49 IPR003591 -
Viun9g03236 842 SMART LRR_typ_2 192 216 IPR003591 -
Viun9g03236 842 SMART LRR_typ_2 264 288 IPR003591 -
Viun9g03236 842 SMART LRR_typ_2 312 335 IPR003591 -
Viun9g03236 842 SMART LRR_typ_2 73 97 IPR003591 -
Viun9g03236 842 Gene3D Ribonuclease Inhibitor 173 437 IPR032675 -
Viun9g03236 842 Gene3D Ribonuclease Inhibitor 1 165 IPR032675 -
Viun9g03236 842 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 160 432 - -
Viun9g03236 842 ProSiteProfiles Leucine-rich repeat profile. 27 49 IPR001611 GO:0005515
Viun9g03236 842 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03236 Viun-Chr9 39395217 39401878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03236 1 841 Receptor kinase-like Gene Family AT5G07180 64.133 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Viun9g03236 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03236 K20718 - gmx:100804875 1521.14