Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03225 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTGTTGATCTTAAACTGTTACAAGACTCAAAGTTCCTTACAGGAATCAGAGGAACAGGTTTTGAAACGAGGTTCTTTCCAAAGGTTGTGCCTTTCGGATATAAGCATTCCTAGCTCCCCTCAGGCCATTGAAGATCTTTCCATTTCCCTTGTTGGCCCAAAGCTTTACACATTCACCCTAGAGGAGCTAAGGGAAGCAACACATAGTTTCTCATGGAGTAATCTTCTTGGTGAAGGAGGGTTCGGACCCGTGTACAAAGGTTTTGTTGATGACAAACTCAGACCTGGTTTGAAGGCTCAGTCTGTAGCAGTGAAACAACTCAACTTGGATGGCTTCCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATTGGCTACTGTTGTGAGGAGGAACACAGGCTTCTTGTGTATGAGTACATGGCTAGAGGCAGCTTGGAGAATCAACTTTTCAGAAGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAGATTGCATTGGGTGCAGCTAAGGGTCTGGCTTTCCTTCACGAAGCAGATAAACCTGTAATATACAGAGATTTCAAAACTTCAAATATCTTACTTGACTCGGATTACACGGCTAAATTATCAGATCTTGGGCTAGCAAAAGATGGTCCTGAAGGGGAAGACACACATGTAACAACAACATGCATAATGGGAACCCGAGGCTATGCTGCCCCTGAGTACATCATGTCAGGTCATCTTTCAACCAAGAGTGATGTGTATAGCTATGGAGTGGTTTTGTTGGAATTGCTTACAGGAAGAAGGGTAGTGGATAAGTGCCGACCCAATAGAGAACGAAGCCTTGTGGAATGGGCAAGGCCTCTTTTGAGAGACCAAAAAAAGCTGCACCATATCATAGACCCTAGATTAGAAGGGCAGTTTCCTACGAAAGGAGCTTTGAAGGTTGCTGCATTGACCTATAAATGTTTAAGCCACCACCCCTATCCAAGGCCAACTATGAGTGATGTGGTTAAGATACTAGAGTCTCTTCAGGATTTTGACGATGTGATCATAGGACCATTTGTGTATGTAGCAGTGAGTGAAAGTAGCCAATGA 1152 0.4366 MSSKKITWKSIVLILNCYKTQSSLQESEEQVLKRGSFQRLCLSDISIPSSPQAIEDLSISLVGPKLYTFTLEELREATHSFSWSNLLGEGGFGPVYKGFVDDKLRPGLKAQSVAVKQLNLDGFQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEDTHVTTTCIMGTRGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGRRVVDKCRPNRERSLVEWARPLLRDQKKLHHIIDPRLEGQFPTKGALKVAALTYKCLSHHPYPRPTMSDVVKILESLQDFDDVIIGPFVYVAVSESSQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03225 383 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Viun9g03225 383 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Viun9g03225 383 PANTHER OS01G0588500 PROTEIN-RELATED 34 363 - -
Viun9g03225 383 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Viun9g03225 383 FunFam Serine/threonine-protein kinase PBS1 164 368 - -
Viun9g03225 383 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Viun9g03225 383 CDD STKc_IRAK 87 362 - -
Viun9g03225 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Viun9g03225 383 Gene3D Phosphorylase Kinase; domain 1 46 163 - -
Viun9g03225 383 ProSiteProfiles Protein kinase domain profile. 81 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03225 Viun-Chr9 39343414 39345792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03225 68 359 Glycoside Hydrolase AT3G07070 52.203 1.41e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun9g03225 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03225 - - gmx:100805771 703.36