Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03218 ATGCTCCTGCTTTTCTGTGTTTTAGGCATAATGTTTCTGTGTCTTAGGCATAATGTTCTGGAAGAATGTTATCAGAAAGAAGTGTTTGAAGTTGCAAAGAGAAGGAACACAATAGCCGTGTTGGATACAGGTTCTGGTAAGACCTTGATTGCAGTGATGATTATGAAAGAGGTTGGTGGAACCATCAAGTCTTTGGGAGTGAAGAGGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTCAATCAGCAATTCAGTAATATAAAATATCTAACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGGAAATTAGTAACAATGATGTATTGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTTCTGCGTATGGAAATGATATGTTTGATTGTTATTGATGAATGCCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCCAGCAAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTACTACGGATTGTGAGGATCAAATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGAAAGAGATGAATAGATATATATTGTCTGCTAAAGAGAGTTGTAGATATCATGACCCAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCCAAGTTTGATGCATTTTTATCAGGAAATAAACGTAACTACAGGAATGTGGAGAATAAAGTCAAGACACTGTCTCAGCGAATGTTCAATGAACTTGGAAAAATTTTACATTGTCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCACGAGAATTTCTCCAACAAAACTGAAGGAATGTGTGAAATTTACAGAACCGGTTATCTTCAGTGTATAACTTTTGTTGAAGAAGTAATAAAATTAATTGAAGAATCTCTCAATTGTGATGATAAAAACATTTTTGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGATACATATCTCCAAAGTTACTTGAACTTATTAAAATTTTCCAATCACTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCGTATTTCGCATTTCTCAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGCAGATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGATTTGACCTCCCAAAGACTGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAAATCAGCTCTTTGACATCATAAGGAGTGAGCGCTCCATGACCGACGCATCTATCCATAAGCACCACGAATCTAGTGTAAAGATATTTACACTGGAGAAAAAAGATGCATACTATGTGGAATCTACCGGAGCTTCTGTGACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACGCTTCCACGAGATCAGTACTCCTCTGCAAAGCCCAGTTATGTGTTTCTGCCCGTGGAAGGGGGTTTCCAATGTAAATTAACATTACCATCTAATTCAGTCCTCCAGCCAATAATTGGTCCATTAGGAAAAGATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATTGAAGATCTTTCAGACAATGATCATATCACAAAAAATAAAGACTCTACTTTACGGGCAGGAACCACGAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGTTGCAGCCAGATTTTATGCCTACAAACTAGAATTCACATGTAGTATTGTTAACGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTTGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGACTGGTGTTTAGGTCAAAATCAGCAGGAGAAGAAGCAGAATTTTTACTTCAAAAGGACACAAAATCATTATGGAGAGAAAAACACTTATATCTGCTTCTACCACTTGAGAAATTGAGTGGTATTTGTGAGGGAGCCTTGCAAATTAATTGGCACGGAATCGATTCTTGTGCATCTGCTATTGAATTCATGAGGAGAAGATTTTCTTTGTTCACTGGAGATTGTGATGATAATGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATGGACTATGTTGGAACAAACAAGATTCCCTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCCATTCATACTGGAAAAATATATTGTGTTATTGACATTGACAGTAACCTGTCTGCTGAAAGCCCTTTCTTTGGAAATAATGAAAAATCCAAGGAACAACTTACCTACTCAGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAAGACAGCATCTTTTACTGTTAAAGCAAAATCATAATCCACACAATCTTCTTTTTAACTTCCATGAGGAAGATGCGCGAGACAAATCTTCAAAAAATGGCTCTACAACCTCCAAAATGCCTGCACATGTTCACGTCCCACCTGAGCTTCTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGTACCGCATTGAATCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTACCAAGTCCAACATAAATAGCTCACTGATTCTAGAAGCAATTACAACTATGAGATGCAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTGCCAGAAGATCTCTTGCAGTTCGTAATTCAACCCTTCATAAATTTGCACTAGAGCGCAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGACGGTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGATTGGAAACCCTTGAAGTGCCTTTAGATGTTAAATACTACACTGAGGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGGAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCATGCTTGCGTGCCAAAAGAAAGTGAGATTGCAGGCCTTGAAAACAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGGATTGGATGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACCTGCTTATCACATTGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTCGCTCAAGTTGTTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCGGGATTATTACTGAGCCAGATATCAGATTATGTAAAGGCCATTTCTGAATCGGATCCTGGATCATTTCCAAGCATTAGAGCTCCGAAGGTACTTGGAGATCTACTGGAAAGTATTGTTGGGGCAATGCTAATTGATACCAAGCTCAGTCTAGACCGAGTTTGGGAGGTTTTCTGTCCTCTATTATCTCCCATAGTTACGCCTGAAAATCTTGAATTGCCTCCATTTCGTGAATTAAATGAACTGTGTGATTCTCTAGGGTATTTTGTGAAAATAAGTGATAACTGTGAAAAAAAGGGATCCATGGTTCATGTTGAGGTTAGTGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGGCAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGAGATAATGCTGTCCATACCAATGATTCACCTCATCTCAAAATGGATTCTAGTACTTGTTTTACTCTAATTGAAGAAAATTCCTCAGAGCTGGTACATAAAAGGAACAGATTGGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAATGACTCTTCCATTGACGACTCCATTCCAGTTAAGTTATCAATTAATATGAAAAAGGGAGGACCACGGAACACACTATATGAGTTGTGTAGGAAACTACAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGCCCTGCAAGGAACCAAGGGACTGAACTGCTTTGTTTCAAAAATTACCTTGTGCATACCCAAGTATGGAAATATTGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAGCCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAG 4950 0.3877 MLLLFCVLGIMFLCLRHNVLEECYQKEVFEVAKRRNTIAVLDTGSGKTLIAVMIMKEVGGTIKSLGVKRLIVFLAPTVHLVNQQFSNIKYLTDFQVEEYYGAKGVDTWTLKTWEQEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHPANEKPKIFGMTASPVGKKGVSSTTDCEDQISELESILDSQRYTVEDRKEMNRYILSAKESCRYHDPARFSALSLKPKIEALWSKFDAFLSGNKRNYRNVENKVKTLSQRMFNELGKILHCLEDLGILCAYEAVKICHENFSNKTEGMCEIYRTGYLQCITFVEEVIKLIEESLNCDDKNIFGVDFDYSKAEDMGYISPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPRISHFSVSYLTGNNTSVDAVAPKRQKQILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRNQLFDIIRSERSMTDASIHKHHESSVKIFTLEKKDAYYVESTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPSYVFLPVEGGFQCKLTLPSNSVLQPIIGPLGKDIRLARHLACFEACKKLHQMGALNEHLVPFIEDLSDNDHITKNKDSTLRAGTTKRKELHGTANICALSGAWGDKLDVAARFYAYKLEFTCSIVNEIYSGFVLLIESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGEEAEFLLQKDTKSLWREKHLYLLLPLEKLSGICEGALQINWHGIDSCASAIEFMRRRFSLFTGDCDDNGIITSPQDTSSMEMDYVGTNKIPFANCVLDADNIKNTLVLAIHTGKIYCVIDIDSNLSAESPFFGNNEKSKEQLTYSDYFSKRYGITLRHPRQHLLLLKQNHNPHNLLFNFHEEDARDKSSKNGSTTSKMPAHVHVPPELLYVLEFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTTKSNINSSLILEAITTMRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSLAVRNSTLHKFALERKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPLDVKYYTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLHACVPKESEIAGLENKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITLHLYKSHTDIDPGVLTDLRSASVNNDNFAQVVVRHNLHQHLLHGSGLLLSQISDYVKAISESDPGSFPSIRAPKVLGDLLESIVGAMLIDTKLSLDRVWEVFCPLLSPIVTPENLELPPFRELNELCDSLGYFVKISDNCEKKGSMVHVEVSVQLPNDLLVREGKGANKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNAVHTNDSPHLKMDSSTCFTLIEENSSELVHKRNRLDGTNPTESILPLNDSSIDDSIPVKLSINMKKGGPRNTLYELCRKLQWPVPAFDSTEYKDRSLFESCEALQGTKGLNCFVSKITLCIPKYGNIECQGEARSDKKASFDSAAVKMLLELQKLGKVEIDPPLSS 1649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03218 1649 Gene3D paz domain 866 990 - -
Viun9g03218 1649 ProSiteProfiles PAZ domain profile. 878 992 IPR003100 GO:0005515
Viun9g03218 1649 Pfam PAZ domain 878 1013 IPR003100 GO:0005515
Viun9g03218 1649 Gene3D - 21 251 IPR027417 -
Viun9g03218 1649 CDD RIBOc 1246 1396 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 203 IPR014001 -
Viun9g03218 1649 FunFam Endoribonuclease dicer-like 1 1224 1394 - -
Viun9g03218 1649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 498 IPR027417 -
Viun9g03218 1649 ProSiteProfiles Ribonuclease III family domain profile. 1230 1373 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 CDD DEXHc_dicer 24 217 - -
Viun9g03218 1649 Pfam Dicer dimerisation domain 557 641 - -
Viun9g03218 1649 CDD RIBOc 1036 1200 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 557 647 IPR005034 GO:0016891
Viun9g03218 1649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 528 IPR001650 -
Viun9g03218 1649 SUPERFAMILY PAZ domain 878 992 IPR036085 GO:0005515
Viun9g03218 1649 Pfam Ribonuclease III domain 1054 1188 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 Pfam Ribonuclease III domain 1266 1372 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 SUPERFAMILY RNase III domain-like 1229 1393 IPR036389 GO:0004525|GO:0006396
Viun9g03218 1649 Gene3D - 360 545 IPR027417 -
Viun9g03218 1649 SMART PAZ_2_a_3 853 1016 IPR003100 GO:0005515
Viun9g03218 1649 SMART ultradead3 17 216 IPR014001 -
Viun9g03218 1649 SMART riboneu5 1036 1209 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 SMART riboneu5 1245 1396 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 Gene3D Ribonuclease III domain 1018 1200 IPR036389 GO:0004525|GO:0006396
Viun9g03218 1649 Gene3D - 1558 1638 - -
Viun9g03218 1649 ProSitePatterns Ribonuclease III family signature. 1266 1274 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 Gene3D Ribonuclease III domain 1227 1396 IPR036389 GO:0004525|GO:0006396
Viun9g03218 1649 ProSiteProfiles Ribonuclease III family domain profile. 1017 1189 IPR000999 GO:0004525|GO:0006396
Viun9g03218 1649 PANTHER DICER-RELATED 35 1476 - -
Viun9g03218 1649 FunFam Dicer-like 104 869 989 - -
Viun9g03218 1649 CDD SF2_C_dicer 366 498 - -
Viun9g03218 1649 SMART helicmild6 403 490 IPR001650 -
Viun9g03218 1649 FunFam Dicer-like 104 1012 1201 - -
Viun9g03218 1649 Coils Coil 260 280 - -
Viun9g03218 1649 Gene3D Dicer dimerisation domain 552 648 IPR038248 -
Viun9g03218 1649 FunFam Endoribonuclease dicer-like 1 552 648 - -
Viun9g03218 1649 SUPERFAMILY RNase III domain-like 1031 1207 IPR036389 GO:0004525|GO:0006396
Viun9g03218 1649 FunFam Endoribonuclease dicer-like 1 361 524 - -
Viun9g03218 1649 Pfam Type III restriction enzyme, res subunit 32 185 IPR006935 GO:0003677|GO:0005524|GO:0016787
Viun9g03218 1649 Pfam Helicase conserved C-terminal domain 376 487 IPR001650 -
Viun9g03218 1649 FunFam Endoribonuclease dicer-like protein 17 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03218 Viun-Chr9 39292529 39317283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03218 398 487 Eukaryotic Initiation Factors Gene Family AT3G19760 34.444 1.09e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03218 K11592 - gmx:100806831 2632.05