Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03217 ATGAAGTTCAACCATGATTCATCATACCATAACCATAATCAAAGTAAAAAACGAAAGCAACCCCATGTTGATAATTATACATCCCTGGAATTGTCTACTTCCAACATGAACCCCAGAAGTTATCAGAAAGAAGTGTTTGAAGTTGCAAAGAGAAGGAACACAATAGCCGTGTTGGATACAGGTTCTGGTAAGACCTTGATTGCAGTGATGATTATGAAAGAGGTTGGTGGAACCATCAAGTCTTTGGGAGTGAAGAGGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTCAATCAGCAATTCAGTAATATAAAATATCTAACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGGAAATTAGTAACAATGATGTATTGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTTCTGCGTATGGAAATGATATGTTTGATTGTTATTGATGAATGCCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCCAGCAAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTACTACGGATTGTGAGGATCAAATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGAAAGAGATGAATAGATATATATTGTCTGCTAAAGAGAGTTGTAGATATCATGACCCAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCCAAGTTTGATGCATTTTTATCAGGAAATAAACGTAACTACAGGAATGTGGAGAATAAAGTCAAGACACTGTCTCAGCGAATGTTCAATGAACTTGGAAAAATTTTACATTGTCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCACGAGAATTTCTCCAACAAAACTGAAGGAATGTGTGAAATTTACAGAACCGGTTATCTTCAGTGTATAACTTTTGTTGAAGAAGTAATAAAATTAATTGAAGAATCTCTCAATTGTGATGATAAAAACATTTTTGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGATACATATCTCCAAAGTTACTTGAACTTATTAAAATTTTCCAATCACTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCGTATTTCGCATTTCTCAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGCAGATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGATTTGACCTCCCAAAGACTGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAAATCAGCTCTTTGACATCATAAGGAGTGAGCGCTCCATGACCGACGCATCTATCCATAAGCACCACGAATCTAGTGTAAAGATATTTACACTGGAGAAAAAAGATGCATACTATGTGGAATCTACCGGAGCTTCTGTGACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACGCTTCCACGAGATCAGTACTCCTCTGCAAAGCCCAGTTATGTGTTTCTGCCCGTGGAAGGGGGTTTCCAATGTAAATTAACATTACCATCTAATTCAGTCCTCCAGCCAATAATTGGTCCATTAGGAAAAGATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATTGAAGATCTTTCAGACAATGATCATATCACAAAAAATAAAGACTCTACTTTACGGGCAGGAACCACGAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGTTGCAGCCAGATTTTATGCCTACAAACTAGAATTCACATGTAGTATTGTTAACGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTTGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGACTGGTGTTTAGGTCAAAATCAGCAGGAGAAGAAGCAGAATTTTTACTTCAAAAGGACACAAAATCATTATGGAGAGAAAAACACTTATATCTGCTTCTACCACTTGAGAAATTGAGTGGTATTTGTGAGGGAGCCTTGCAAATTAATTGGCACGGAATCGATTCTTGTGCATCTGCTATTGAATTCATGAGGAGAAGATTTTCTTTGTTCACTGGAGATTGTGATGATAATGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATGGACTATGTTGGAACAAACAAGATTCCCTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCCATTCATACTGGAAAAATATATTGTGTTATTGACATTGACAGTAACCTGTCTGCTGAAAGCCCTTTCTTTGGAAATAATGAAAAATCCAAGGAACAACTTACCTACTCAGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAAGACAGCATCTTTTACTGTTAAAGCAAAATCATAATCCACACAATCTTCTTTTTAACTTCCATGAGGAAGATGCGCGAGACAAATCTTCAAAAAATGGCTCTACAACCTCCAAAATGCCTGCACATGTTCACGTCCCACCTGAGCTTCTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGTACCGCATTGAATCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTACCAAGTCCAACATAAATAGCTCACTGATTCTAGAAGCAATTACAACTATGAGATGCAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTGCCAGAAGATCTCTTGCAGTTCGTAATTCAACCCTTCATAAATTTGCACTAGAGCGCAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGACGGTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGATTGGAAACCCTTGAAGTGCCTTTAGATGTTAAATACTACACTGAGGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGGAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCATGCTTGCGTGCCAAAAGAAAGTGAGATTGCAGGCCTTGAAAACAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGGATTGGATGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACCTGCTTATCACATTGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTCGCTCAAGTTGTTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCGGGATTATTACTGAGCCAGATATCAGATTATGTAAAGGCCATTTCTGAATCGGATCCTGGATCATTTCCAAGCATTAGAGCTCCGAAGGTACTTGGAGATCTACTGGAAAGTATTGTTGGGGCAATGCTAATTGATACCAAGCTCAGTCTAGACCGAGTTTGGGAGGTTTTCTGTCCTCTATTATCTCCCATAGTTACGCCTGAAAATCTTGAATTGCCTCCATTTCGTGAATTAAATGAACTGTGTGATTCTCTAGGGTATTTTGTGAAAATAAGTGATAACTGTGAAAAAAAGGGATCCATGGTTCATGTTGAGGTTAGTGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGGCAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGAGATAATGCTGTCCATACCAATGATTCACCTCATCTCAAAATGGATTCTAGTACTTGTTTTACTCTAATTGAAGAAAATTCCTCAGAGCTGGTACATAAAAGGAACAGATTGGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAATGACTCTTCCATTGACGACTCCATTCCAGTTAAGTTATCAATTAATATGAAAAAGGGAGGACCACGGAACACACTATATGAGTTGTGTAGGAAACTACAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGCCCTGCAAGGAACCAAGGGACTGAACTGCTTTGTTTCAAAAATTACCTTGTGCATACCCAAGTATGGAAATATTGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAGCCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAG 5001 0.3871 MKFNHDSSYHNHNQSKKRKQPHVDNYTSLELSTSNMNPRSYQKEVFEVAKRRNTIAVLDTGSGKTLIAVMIMKEVGGTIKSLGVKRLIVFLAPTVHLVNQQFSNIKYLTDFQVEEYYGAKGVDTWTLKTWEQEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHPANEKPKIFGMTASPVGKKGVSSTTDCEDQISELESILDSQRYTVEDRKEMNRYILSAKESCRYHDPARFSALSLKPKIEALWSKFDAFLSGNKRNYRNVENKVKTLSQRMFNELGKILHCLEDLGILCAYEAVKICHENFSNKTEGMCEIYRTGYLQCITFVEEVIKLIEESLNCDDKNIFGVDFDYSKAEDMGYISPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPRISHFSVSYLTGNNTSVDAVAPKRQKQILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRNQLFDIIRSERSMTDASIHKHHESSVKIFTLEKKDAYYVESTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPSYVFLPVEGGFQCKLTLPSNSVLQPIIGPLGKDIRLARHLACFEACKKLHQMGALNEHLVPFIEDLSDNDHITKNKDSTLRAGTTKRKELHGTANICALSGAWGDKLDVAARFYAYKLEFTCSIVNEIYSGFVLLIESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGEEAEFLLQKDTKSLWREKHLYLLLPLEKLSGICEGALQINWHGIDSCASAIEFMRRRFSLFTGDCDDNGIITSPQDTSSMEMDYVGTNKIPFANCVLDADNIKNTLVLAIHTGKIYCVIDIDSNLSAESPFFGNNEKSKEQLTYSDYFSKRYGITLRHPRQHLLLLKQNHNPHNLLFNFHEEDARDKSSKNGSTTSKMPAHVHVPPELLYVLEFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTTKSNINSSLILEAITTMRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSLAVRNSTLHKFALERKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPLDVKYYTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLHACVPKESEIAGLENKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITLHLYKSHTDIDPGVLTDLRSASVNNDNFAQVVVRHNLHQHLLHGSGLLLSQISDYVKAISESDPGSFPSIRAPKVLGDLLESIVGAMLIDTKLSLDRVWEVFCPLLSPIVTPENLELPPFRELNELCDSLGYFVKISDNCEKKGSMVHVEVSVQLPNDLLVREGKGANKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNAVHTNDSPHLKMDSSTCFTLIEENSSELVHKRNRLDGTNPTESILPLNDSSIDDSIPVKLSINMKKGGPRNTLYELCRKLQWPVPAFDSTEYKDRSLFESCEALQGTKGLNCFVSKITLCIPKYGNIECQGEARSDKKASFDSAAVKMLLELQKLGKVEIDPPLSS 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03217 1666 CDD SF2_C_dicer 383 515 - -
Viun9g03217 1666 Gene3D - 377 562 IPR027417 -
Viun9g03217 1666 SMART ultradead3 34 233 IPR014001 -
Viun9g03217 1666 Gene3D Ribonuclease III domain 1244 1413 IPR036389 GO:0004525|GO:0006396
Viun9g03217 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 515 IPR027417 -
Viun9g03217 1666 Pfam Dicer dimerisation domain 574 658 - -
Viun9g03217 1666 Gene3D - 1575 1655 - -
Viun9g03217 1666 FunFam Endoribonuclease dicer-like 1 569 665 - -
Viun9g03217 1666 MobiDBLite consensus disorder prediction 1 24 - -
Viun9g03217 1666 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 574 664 IPR005034 GO:0016891
Viun9g03217 1666 ProSiteProfiles Ribonuclease III family domain profile. 1247 1390 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 CDD RIBOc 1053 1217 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 Coils Coil 277 297 - -
Viun9g03217 1666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Viun9g03217 1666 SUPERFAMILY RNase III domain-like 1246 1410 IPR036389 GO:0004525|GO:0006396
Viun9g03217 1666 FunFam Endoribonuclease dicer-like 1 1241 1411 - -
Viun9g03217 1666 Gene3D Ribonuclease III domain 1035 1217 IPR036389 GO:0004525|GO:0006396
Viun9g03217 1666 FunFam Endoribonuclease dicer-like 1 378 541 - -
Viun9g03217 1666 Pfam Type III restriction enzyme, res subunit 36 202 IPR006935 GO:0003677|GO:0005524|GO:0016787
Viun9g03217 1666 SMART PAZ_2_a_3 870 1033 IPR003100 GO:0005515
Viun9g03217 1666 SMART riboneu5 1053 1226 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 SMART riboneu5 1262 1413 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 FunFam Dicer-like 104 886 1006 - -
Viun9g03217 1666 CDD DEXHc_dicer 36 234 - -
Viun9g03217 1666 SMART helicmild6 420 507 IPR001650 -
Viun9g03217 1666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 545 IPR001650 -
Viun9g03217 1666 CDD RIBOc 1263 1413 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 Gene3D paz domain 883 1007 - -
Viun9g03217 1666 FunFam Endoribonuclease dicer-like protein 33 272 - -
Viun9g03217 1666 ProSitePatterns Ribonuclease III family signature. 1283 1291 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 FunFam Dicer-like 104 1029 1218 - -
Viun9g03217 1666 Pfam PAZ domain 895 1030 IPR003100 GO:0005515
Viun9g03217 1666 PANTHER DICER-RELATED 52 1493 - -
Viun9g03217 1666 ProSiteProfiles PAZ domain profile. 895 1009 IPR003100 GO:0005515
Viun9g03217 1666 Gene3D - 32 268 IPR027417 -
Viun9g03217 1666 SUPERFAMILY PAZ domain 895 1009 IPR036085 GO:0005515
Viun9g03217 1666 Pfam Ribonuclease III domain 1283 1389 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 Pfam Ribonuclease III domain 1071 1205 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 Pfam Helicase conserved C-terminal domain 393 504 IPR001650 -
Viun9g03217 1666 SUPERFAMILY RNase III domain-like 1048 1224 IPR036389 GO:0004525|GO:0006396
Viun9g03217 1666 ProSiteProfiles Ribonuclease III family domain profile. 1034 1206 IPR000999 GO:0004525|GO:0006396
Viun9g03217 1666 Gene3D Dicer dimerisation domain 569 665 IPR038248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03217 Viun-Chr9 39292529 39317283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03217 415 504 Eukaryotic Initiation Factors Gene Family AT3G19760 34.444 1.46e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03217 K11592 - gmx:100806831 2674.43