Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03216 ATGAACCCCAGAAGTTATCAGAAAGAAGTGTTTGAAGTTGCAAAGAGAAGGAACACAATAGCCGTGTTGGATACAGGTTCTGGTAAGACCTTGATTGCAGTGATGATTATGAAAGAGGTTGGTGGAACCATCAAGTCTTTGGGAGTGAAGAGGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTCAATCAGCAATTCAGTAATATAAAATATCTAACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGGAAATTAGTAACAATGATGTATTGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTTCTGCGTATGGAAATGATATGTTTGATTGTTATTGATGAATGCCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCCAGCAAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTACTACGGATTGTGAGGATCAAATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGAAAGAGATGAATAGATATATATTGTCTGCTAAAGAGAGTTGTAGATATCATGACCCAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCCAAGTTTGATGCATTTTTATCAGGAAATAAACGTAACTACAGGAATGTGGAGAATAAAGTCAAGACACTGTCTCAGCGAATGTTCAATGAACTTGGAAAAATTTTACATTGTCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCACGAGAATTTCTCCAACAAAACTGAAGGAATGTGTGAAATTTACAGAACCGGTTATCTTCAGTGTATAACTTTTGTTGAAGAAGTAATAAAATTAATTGAAGAATCTCTCAATTGTGATGATAAAAACATTTTTGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGATACATATCTCCAAAGTTACTTGAACTTATTAAAATTTTCCAATCACTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCGTATTTCGCATTTCTCAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGCAGATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGATTTGACCTCCCAAAGACTGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAAATCAGCTCTTTGACATCATAAGGAGTGAGCGCTCCATGACCGACGCATCTATCCATAAGCACCACGAATCTAGTGTAAAGATATTTACACTGGAGAAAAAAGATGCATACTATGTGGAATCTACCGGAGCTTCTGTGACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACGCTTCCACGAGATCAGTACTCCTCTGCAAAGCCCAGTTATGTGTTTCTGCCCGTGGAAGGGGGTTTCCAATGTAAATTAACATTACCATCTAATTCAGTCCTCCAGCCAATAATTGGTCCATTAGGAAAAGATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATTGAAGATCTTTCAGACAATGATCATATCACAAAAAATAAAGACTCTACTTTACGGGCAGGAACCACGAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGTTGCAGCCAGATTTTATGCCTACAAACTAGAATTCACATGTAGTATTGTTAACGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTTGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGACTGGTGTTTAGGTCAAAATCAGCAGGAGAAGAAGCAGAATTTTTACTTCAAAAGGACACAAAATCATTATGGAGAGAAAAACACTTATATCTGCTTCTACCACTTGAGAAATTGAGTGGTATTTGTGAGGGAGCCTTGCAAATTAATTGGCACGGAATCGATTCTTGTGCATCTGCTATTGAATTCATGAGGAGAAGATTTTCTTTGTTCACTGGAGATTGTGATGATAATGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATGGACTATGTTGGAACAAACAAGATTCCCTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCCATTCATACTGGAAAAATATATTGTGTTATTGACATTGACAGTAACCTGTCTGCTGAAAGCCCTTTCTTTGGAAATAATGAAAAATCCAAGGAACAACTTACCTACTCAGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAAGACAGCATCTTTTACTGTTAAAGCAAAATCATAATCCACACAATCTTCTTTTTAACTTCCATGAGGAAGATGCGCGAGACAAATCTTCAAAAAATGGCTCTACAACCTCCAAAATGCCTGCACATGTTCACGTCCCACCTGAGCTTCTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGTACCGCATTGAATCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTACCAAGTCCAACATAAATAGCTCACTGATTCTAGAAGCAATTACAACTATGAGATGCAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTGCCAGAAGATCTCTTGCAGTTCGTAATTCAACCCTTCATAAATTTGCACTAGAGCGCAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGACGGTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGATTGGAAACCCTTGAAGTGCCTTTAGATGTTAAATACTACACTGAGGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGGAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCATGCTTGCGTGCCAAAAGAAAGTGAGATTGCAGGCCTTGAAAACAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGGATTGGATGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACCTGCTTATCACATTGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTCGCTCAAGTTGTTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCGGGATTATTACTGAGCCAGATATCAGATTATGTAAAGGCCATTTCTGAATCGGATCCTGGATCATTTCCAAGCATTAGAGCTCCGAAGGTACTTGGAGATCTACTGGAAAGTATTGTTGGGGCAATGCTAATTGATACCAAGCTCAGTCTAGACCGAGTTTGGGAGGTTTTCTGTCCTCTATTATCTCCCATAGTTACGCCTGAAAATCTTGAATTGCCTCCATTTCGTGAATTAAATGAACTGTGTGATTCTCTAGGGTATTTTGTGAAAATAAGTGATAACTGTGAAAAAAAGGGATCCATGGTTCATGTTGAGGTTAGTGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGGCAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGAGATAATGCTGTCCATACCAATGATTCACCTCATCTCAAAATGGATTCTAGTACTTGTTTTACTCTAATTGAAGAAAATTCCTCAGAGCTGGTACATAAAAGGAACAGATTGGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAATGACTCTTCCATTGACGACTCCATTCCAGTTAAGTTATCAATTAATATGAAAAAGGGAGGACCACGGAACACACTATATGAGTTGTGTAGGAAACTACAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGCCCTGCAAGGAACCAAGGGACTGAACTGCTTTGTTTCAAAAATTACCTTGTGCATACCCAAGTATGGAAATATTGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAGCCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAG 4896 0.3881 MNPRSYQKEVFEVAKRRNTIAVLDTGSGKTLIAVMIMKEVGGTIKSLGVKRLIVFLAPTVHLVNQQFSNIKYLTDFQVEEYYGAKGVDTWTLKTWEQEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHPANEKPKIFGMTASPVGKKGVSSTTDCEDQISELESILDSQRYTVEDRKEMNRYILSAKESCRYHDPARFSALSLKPKIEALWSKFDAFLSGNKRNYRNVENKVKTLSQRMFNELGKILHCLEDLGILCAYEAVKICHENFSNKTEGMCEIYRTGYLQCITFVEEVIKLIEESLNCDDKNIFGVDFDYSKAEDMGYISPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPRISHFSVSYLTGNNTSVDAVAPKRQKQILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRNQLFDIIRSERSMTDASIHKHHESSVKIFTLEKKDAYYVESTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPSYVFLPVEGGFQCKLTLPSNSVLQPIIGPLGKDIRLARHLACFEACKKLHQMGALNEHLVPFIEDLSDNDHITKNKDSTLRAGTTKRKELHGTANICALSGAWGDKLDVAARFYAYKLEFTCSIVNEIYSGFVLLIESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGEEAEFLLQKDTKSLWREKHLYLLLPLEKLSGICEGALQINWHGIDSCASAIEFMRRRFSLFTGDCDDNGIITSPQDTSSMEMDYVGTNKIPFANCVLDADNIKNTLVLAIHTGKIYCVIDIDSNLSAESPFFGNNEKSKEQLTYSDYFSKRYGITLRHPRQHLLLLKQNHNPHNLLFNFHEEDARDKSSKNGSTTSKMPAHVHVPPELLYVLEFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTTKSNINSSLILEAITTMRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSLAVRNSTLHKFALERKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPLDVKYYTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLHACVPKESEIAGLENKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITLHLYKSHTDIDPGVLTDLRSASVNNDNFAQVVVRHNLHQHLLHGSGLLLSQISDYVKAISESDPGSFPSIRAPKVLGDLLESIVGAMLIDTKLSLDRVWEVFCPLLSPIVTPENLELPPFRELNELCDSLGYFVKISDNCEKKGSMVHVEVSVQLPNDLLVREGKGANKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNAVHTNDSPHLKMDSSTCFTLIEENSSELVHKRNRLDGTNPTESILPLNDSSIDDSIPVKLSINMKKGGPRNTLYELCRKLQWPVPAFDSTEYKDRSLFESCEALQGTKGLNCFVSKITLCIPKYGNIECQGEARSDKKASFDSAAVKMLLELQKLGKVEIDPPLSS 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03216 1631 Gene3D - 1540 1620 - -
Viun9g03216 1631 FunFam Endoribonuclease dicer-like 1 534 630 - -
Viun9g03216 1631 Gene3D Dicer dimerisation domain 534 630 IPR038248 -
Viun9g03216 1631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 510 IPR001650 -
Viun9g03216 1631 Coils Coil 242 262 - -
Viun9g03216 1631 ProSitePatterns Ribonuclease III family signature. 1248 1256 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 10 185 IPR014001 -
Viun9g03216 1631 Gene3D Ribonuclease III domain 1209 1378 IPR036389 GO:0004525|GO:0006396
Viun9g03216 1631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 480 IPR027417 -
Viun9g03216 1631 CDD RIBOc 1228 1378 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 PANTHER DICER-RELATED 17 1458 - -
Viun9g03216 1631 Pfam Dicer dimerisation domain 539 623 - -
Viun9g03216 1631 ProSiteProfiles Ribonuclease III family domain profile. 1212 1355 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 Gene3D - 1 233 IPR027417 -
Viun9g03216 1631 CDD RIBOc 1018 1182 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 SMART helicmild6 385 472 IPR001650 -
Viun9g03216 1631 FunFam Dicer-like 104 851 971 - -
Viun9g03216 1631 FunFam Dicer-like 104 994 1183 - -
Viun9g03216 1631 CDD DEXHc_dicer 1 199 - -
Viun9g03216 1631 Pfam Helicase conserved C-terminal domain 358 469 IPR001650 -
Viun9g03216 1631 SMART ultradead3 2 198 IPR014001 -
Viun9g03216 1631 Gene3D - 342 528 IPR027417 -
Viun9g03216 1631 Gene3D Ribonuclease III domain 1000 1182 IPR036389 GO:0004525|GO:0006396
Viun9g03216 1631 SMART PAZ_2_a_3 835 998 IPR003100 GO:0005515
Viun9g03216 1631 SUPERFAMILY RNase III domain-like 1211 1375 IPR036389 GO:0004525|GO:0006396
Viun9g03216 1631 SUPERFAMILY PAZ domain 860 974 IPR036085 GO:0005515
Viun9g03216 1631 Pfam Ribonuclease III domain 1248 1354 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 Pfam Ribonuclease III domain 1036 1170 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 Gene3D paz domain 848 972 - -
Viun9g03216 1631 ProSiteProfiles Ribonuclease III family domain profile. 999 1171 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 Pfam PAZ domain 860 995 IPR003100 GO:0005515
Viun9g03216 1631 Pfam Type III restriction enzyme, res subunit 2 167 IPR006935 GO:0003677|GO:0005524|GO:0016787
Viun9g03216 1631 SUPERFAMILY RNase III domain-like 1013 1189 IPR036389 GO:0004525|GO:0006396
Viun9g03216 1631 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 539 629 IPR005034 GO:0016891
Viun9g03216 1631 ProSiteProfiles PAZ domain profile. 860 974 IPR003100 GO:0005515
Viun9g03216 1631 SMART riboneu5 1227 1378 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 SMART riboneu5 1018 1191 IPR000999 GO:0004525|GO:0006396
Viun9g03216 1631 FunFam Endoribonuclease dicer-like protein 1 237 - -
Viun9g03216 1631 CDD SF2_C_dicer 348 480 - -
Viun9g03216 1631 FunFam Endoribonuclease dicer-like 1 343 506 - -
Viun9g03216 1631 FunFam Endoribonuclease dicer-like 1 1206 1376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03216 Viun-Chr9 39292529 39317293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03216 380 469 Eukaryotic Initiation Factors Gene Family AT3G19760 34.444 1.16e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03216 K11592 - gmx:100806831 2640.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03216 9 39292529 39317293 Viun9g03216 9 39292529 39317293 ECH
Viun3g05495 3 60874818 60883953 Viun9g03216 9 39292529 39317293 ECH
Viun9g00530 9 3888039 3902239 Viun9g03216 9 39292529 39317293 ECH