Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03214 ATGTCTCCTGTTTCGTCCTCTGTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCTGTATAGCCCTAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATAGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACGTGCTCATGGAAGATTTTAGGCTGCTTTCTGAGTATACAAATGCAGATAATCATTGTCTTCCGGCAAGAATCCACCAAGTGAAGAAAGCTAATAACGTTGAGGAACTTCAGAGATTCTCCGTGAGAGAGTCTATCAGAAATTCGGACTCAACTTTGTCTGGCTGCTCCATCTTTGTTGATCCAGACATTTCATCTGAGTTGAGGAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAATTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATACCTTGGATATTGTAATAACCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACGTTAATAGTGGCGTTTCAGGAAAAGAAGTAATAAAGCAAGAAGCCACTGACTATCCTCTGGATAGTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAACTCTGCAAAAATTGGAGTCAGAAATCGCCGTGGCCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCACCAACCTTCTAGACTCTATCTGCTGGTCTATATCTGACTCAACTTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCACGCTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCGAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTCAAAAACCATTTCCTTACCATACTCTTCCCAATTGACCGTTTTTCCGAGATGGGTCCTTCATCAAGAACGTTTTTCAGCCATAATGGTTTTACGTGTCTTCAGGTGTTGGATCATATACATGCATTTTATCAGGAGAACATGTCAAGGCAGGAAATTGAAGTTGCAATTCACAGTGATTCAAGACACGCTGATAGGCTTCGATCAGTGTACTCAAATAAGGAAACAACAGCACGTGGCCATGTAATATTCAAAAGGGTTGAATTCTTGGGTAGTCGAACAAGTTTTGAAATGTTGAAGCGTGTAAGTGGGGAAAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1518 0.4183 MSPVSSSVQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGLYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFIVTLGWFVDSVRKNVRLSESHYRVKSYGDNNVLMEDFRLLSEYTNADNHCLPARIHQVKKANNVEELQRFSVRESIRNSDSTLSGCSIFVDPDISSELRNKVIETASREGANLVEQWFVGCNVSHVVTEGTSIQRYLGYCNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLMLEDVNSGVSGKEVIKQEATDYPLDSESEVGYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPTNLLDSICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHNGFTCLQVLDHIHAFYQENMSRQEIEVAIHSDSRHADRLRSVYSNKETTARGHVIFKRVEFLGSRTSFEMLKRVSGENNSNVYELLLRA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03214 505 ProSiteProfiles BRCT domain profile. 158 236 IPR001357 -
Viun9g03214 505 Pfam twin BRCT domain 20 74 IPR001357 -
Viun9g03214 505 ProSiteProfiles BRCT domain profile. 12 104 IPR001357 -
Viun9g03214 505 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 8 505 - -
Viun9g03214 505 Pfam Family of unknown function (DUF6699) 412 489 IPR046522 -
Viun9g03214 505 SUPERFAMILY BRCT domain 14 105 IPR036420 -
Viun9g03214 505 Gene3D BRCT domain 15 106 IPR036420 -
Viun9g03214 505 SMART BRCT_7 160 236 IPR001357 -
Viun9g03214 505 SMART BRCT_7 14 94 IPR001357 -
Viun9g03214 505 CDD BRCT_TopBP1_rpt2_like 16 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03214 Viun-Chr9 39284722 39291347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03214 9 104 Core DNA Replication Machinery Family AT1G77320 38.542 1.08e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03214 - - gmx:100815253 887.1