Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03209 ATGAATATGGAGAGGGACACAGAGAAGTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTTCGGAAGAGAAAGTGGGGTAAATGGGTTTCTGAAATCAGACTCCCGAATAGCCGTGAACGAATATGGCTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGACGCTGCTCTTTTCTGTCTACGTGGTCGCCGCGCCAATTTCAACTTCCCCAACACTCCTTGCAATGTGCCTCTGCCTGTGCCTTCTCACCACTCTCTCACCCCACATCAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTGCTACTAAAAAACCCTCTTGCACAAGAATCTCATGCTGATGTTGATGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGGAAATTCTTCATCATTTGGAGGGAAGTTGTGTAAATCTGACAGCACAGCGGAGTGTAGTTCCAGTACTGTGCATGAATGTGATGGCAGGGTGGAGGTGGAGCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGATTACTCCAATGATGTTTTCCCTGTTGTTGGATCCGACTATGATCTCTACTTTGACCTACACAACATGCACTCCACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTATCAAGAATTCACTGAAGCCGAAGAAGACCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 732 0.4658 MNMERDTEKCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNVPLPVPSHHSLTPHQIQEVAAKFANEDPLLLKNPLAQESHADVDASAAAAAAAAGNSSSFGGKLCKSDSTAECSSSTVHECDGRVEVEHGDMDWTFLKEFDYSNDVFPVVGSDYDLYFDLHNMHSTSGELLYSTPPPPPFEGYQEFTEAEEDPFSHQSFLWNWNF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03209 243 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Viun9g03209 243 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Viun9g03209 243 SUPERFAMILY DNA-binding domain 16 73 IPR016177 GO:0003677
Viun9g03209 243 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Viun9g03209 243 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Viun9g03209 243 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Viun9g03209 243 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Viun9g03209 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 157 - -
Viun9g03209 243 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Viun9g03209 243 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03209 Viun-Chr9 39240661 39241598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03209 4 103 AP2-EREBP Transcription Factor Family AT1G74930 67.000 8.04e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun9g03209 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03209 - - vra:106760431 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03209 9 39240661 39241598 Viun9g03209 9 39240661 39241598 ECH