Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03191 ATGGTCTGCGAGATGGAGAATGATTGCATAGAGGACATGGACATTGAGGCCCTTCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATGGAGGAGCCAACTATAGTTGATTTCAAGCGACTCATGGAGCTTACAAATTTTACAGAAAAAGGGTCTTCTCAGTTGGCGTACCTAATGAAACACTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTTAGCAAGCAAAGGCAGGATGTTGAGCTCAGGAAATTAGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGGGGTGATAAACGCCCAGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCATGATATACCTTGCAGGAAAAGTGATGCTGTGGTTCAAAACAAGAAGAACGAGATTGATGCTGAGTATGACACCGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGGGAACAGATTCTTGAAGAAAAGCTGCAAGAAAGTATAGCAAACATTGAAAGGCAATCCTCACCTGTGGAAGAACTGTCCCAGATCCTGAAAAGAGCAGACAATTTCTTGCATTTTATACTGCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGCTTTATATACAATCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTGCCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTGATATACGTAGAGCCCGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTAAATAAAACCATTCACATTACAGAGGAAACAATGCGAGCAAAACAAATGCTGGCGACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTCGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCGTTGCAAAAAGTACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATCAGCAATGCCGTCAAGTTCACCCATGAAGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTTCTTTTGCAAAGGCAGAATGCATGCAAAAGATGACTTCAGAGCATTCAACTATTTCAGTGAATGGTTTGAAAGAAGATAAATATCTATCAACGCCTCAAAGTGGCAGCAACAGAAAACCTCTTGGTGATGATTGTCCCAGCCAAAACCATGCATTCAATGATGAATGTAGATCACCGGTCAAAAGCGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATTGGAATACCAGATGCTATTCCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGATCATTCTCGAAAGTACGGTGGCACCGGGCTAGGATTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTTTAACCGTGTCTAGCAAAGAACATTACGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAAATGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAACAATGATGCTGCATCTGATGATACAATAGAAAGTTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTGTTCTCTTCTAATGGATGTAGCAGGACACAGATGTTATTACCAAACAAAATTGGCTACACAAGCTCCCATAAACTTGGTGGATTTTCTGACAGTTTATATGCAATCCTCTCTAATGATATCATGTCAAAAGAGACATGCTCAGTTGACGATTCATCTTCAGTTGTTGATGGTCCAGAAATGTCTGAATCGGCCAGTTCATCTGGTCACAGCTCAGAAGCAAAGAACAGAAGTTTAGTTAGCAGAGATAAACTGCAGCAAGATAAGGCTCATACCTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTAGCAAGTGGAGAAACGGCTGCAGCAACAAAGTCATGTGAATCCCAACAAACATGTCAGGGTCAGGGAAAGACAAGCACAACTATCCAATCAAGTAACTGTACACCAGGAGTAACCAAATCCTCATCAAGGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACACAGTCCATGATGAAGCAATTAGGCCATAGCATACATGTTGTGAATAATGGCGTGGAAGCTGTACGTGCAGTTCAGCGCTGCTCTTTTGACTTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCTAAGTCTTTCAGATTCATATTATGAATGTTCTGAACCTTCTAGAAAGCGAATTCCTATTGTTGCTATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTATGCAAATGGAATGGACTCGTTTGTGTCAAAACCTGTAACTTTCCAGAAACTGAAAGAGTGTATTGAACAGTACCTGAGGTGA 3030 0.4149 MVCEMENDCIEDMDIEALPSMWPEDIGTDVGKQFIEKPGRDQDMLEEVTIMEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDGIWHDIPCRKSDAVVQNKKNEIDAEYDTVMYWKQRALQLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVTDDVPIEVVGDVLRMRQILTNLISNAVKFTHEGKIGINLYVVPEPSFAKAECMQKMTSEHSTISVNGLKEDKYLSTPQSGSNRKPLGDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPYSAGTTVWIRCDVYDTGIGIPDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSNACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGCSRTQMLLPNKIGYTSSHKLGGFSDSLYAILSNDIMSKETCSVDDSSSVVDGPEMSESASSSGHSSEAKNRSLVSRDKLQQDKAHTWSLNGYADSSEATVASGETAAATKSCESQQTCQGQGKTSTTIQSSNCTPGVTKSSSRPKILLVEDNKINIMVTQSMMKQLGHSIHVVNNGVEAVRAVQRCSFDLILMDVCMPVMNGLQATKLIRSFEETGNWDAARNAGIELSLSDSYYECSEPSRKRIPIVAMTANALSESAEECYANGMDSFVSKPVTFQKLKECIEQYLR 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03191 1009 MobiDBLite consensus disorder prediction 763 800 - -
Viun9g03191 1009 FunFam Histidine kinase 5 213 348 - -
Viun9g03191 1009 Gene3D PAS domain 212 348 - -
Viun9g03191 1009 Pfam Response regulator receiver domain 866 933 IPR001789 GO:0000160
Viun9g03191 1009 Coils Coil 177 208 - -
Viun9g03191 1009 MobiDBLite consensus disorder prediction 835 857 - -
Viun9g03191 1009 MobiDBLite consensus disorder prediction 542 560 - -
Viun9g03191 1009 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 45 1008 - -
Viun9g03191 1009 MobiDBLite consensus disorder prediction 763 789 - -
Viun9g03191 1009 ProSiteProfiles Histidine kinase domain profile. 378 674 IPR005467 -
Viun9g03191 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 672 IPR003594 -
Viun9g03191 1009 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310|GO:0016772
Viun9g03191 1009 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310|GO:0016772
Viun9g03191 1009 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Viun9g03191 1009 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Viun9g03191 1009 FunFam Putative histidine kinase 5 359 436 - -
Viun9g03191 1009 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Viun9g03191 1009 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Viun9g03191 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 676 IPR036890 -
Viun9g03191 1009 ProSiteProfiles Response regulatory domain profile. 865 1008 IPR001789 GO:0000160
Viun9g03191 1009 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Viun9g03191 1009 Coils Coil 91 118 - -
Viun9g03191 1009 Gene3D - 857 1009 - -
Viun9g03191 1009 SMART HKATPase_4 482 674 IPR003594 -
Viun9g03191 1009 FunFam Histidine kinase 5 858 1009 - -
Viun9g03191 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Viun9g03191 1009 SUPERFAMILY CheY-like 862 1009 IPR011006 -
Viun9g03191 1009 CDD HATPase_EvgS-ArcB-TorS-like 487 671 - -
Viun9g03191 1009 Gene3D - 437 679 IPR036890 -
Viun9g03191 1009 Gene3D - 359 436 - -
Viun9g03191 1009 CDD REC_hyHK_CKI1_RcsC-like 866 1004 - -
Viun9g03191 1009 MobiDBLite consensus disorder prediction 542 569 - -
Viun9g03191 1009 SMART REC_2 864 1004 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03191 Viun-Chr9 39151517 39157291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03191 1 1008 Histidine Kinase Gene Family AT5G10720 57.982 0.0 1111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun9g03191 HATPase_c 2e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03191 - - gmx:100819520 1698.72