Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03186 ATGAGCTTTCTCAATTCAATTTTATCTGCTCCAACCCAGGTTCAAAATTCCCAGGATGCAATTGTGAGCGGTGGGGGTCTAAGTCATAATGGAAAATTCAGCTATGGGTATGCTAGCTCTCCCGGCAAGAGATCTTCAATGGAAGATTTCTACGACACAAGAATTGATGGTGTTAATGGTGAAATCGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTACGTCAAGAAAAACTTGTTCAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATATCTGATGCATATAATCATACCGATTCTGAGTTTCTGAAGTCAGAAAATAACCAAAATAAAGATGCTGGTTCAACTGCTTCCACTGCGATTTTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTCATATGCAGGGGTGGTAATGCTATTGCTGTTTCTCGAGATCACAAACCAGACCAAACTGATGAGAGGCAGAGGATTGAAGAGGCAGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGAGCGTTTGGTGATAGACTCTTAAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGATAAGTCCCTTGAGTTTCTTATCCTAGCTAGTGATGGACTATGGGATGTTGTCTCAAATGAGGAAGCAGTTACTATGATTAAACCAATTGAGGATGCTGAAGAATCAGCAAAGAGGTTGATGCAAGAAGCATATGGGAGAGGTAGTGCTGACAATATCACATGCGTTGTGGTTCGTTTCTTGACTCACCATGGCACTTCTACTCATAGTAGTTCTGGAGGTAACAATGGCACTGCTCATGGTACTTCTGGAGGTAACCATGGCCCTTCTCATGGTAATTCTGGAGGTAGCCATGGCCCTTCTCATGGTACTTCTGGAGGTAACCATGGCCCTTCTCATGGTACTTCTGGGGGTAACCATGGCACTTCTCATGGTAGTTCTGGAGGTAACCTTGGCCCTTCTCATGGTAGTTCTGGAGTTAGCCATGGCACTTCTCATGGTAGTTCTGGAGGAAACCTTGGACCTTCTCATGGTAGTTCTGGAGTTAGCCATGGCACTTCTCATGGTAATTCTGGAGGTATCCATGGCCCTTCTCATGGTAGTTCTGGAGGTAACCATGTCACTTCTTCTCATGGTAGTTCTGGAGGTAACCATGGCCCTTCTTCTCATGGTAGTTCTGGAGGTGGTAATAAGAACCTTCCGAATGCTGGTTATAAGTAA 1320 0.4424 MSFLNSILSAPTQVQNSQDAIVSGGGLSHNGKFSYGYASSPGKRSSMEDFYDTRIDGVNGEIVGLFGVFDGHGGARAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSENNQNKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDKSLEFLILASDGLWDVVSNEEAVTMIKPIEDAEESAKRLMQEAYGRGSADNITCVVVRFLTHHGTSTHSSSGGNNGTAHGTSGGNHGPSHGNSGGSHGPSHGTSGGNHGPSHGTSGGNHGTSHGSSGGNLGPSHGSSGVSHGTSHGSSGGNLGPSHGSSGVSHGTSHGNSGGIHGPSHGSSGGNHVTSSHGSSGGNHGPSSHGSSGGGNKNLPNAGYK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03186 439 CDD PP2Cc 33 280 IPR001932 -
Viun9g03186 439 SMART PP2C_SIG_2 45 280 IPR001932 -
Viun9g03186 439 Gene3D - 26 285 IPR036457 -
Viun9g03186 439 PANTHER PROTEIN PHOSPHATASE 28 279 IPR015655 GO:0004722|GO:0006470
Viun9g03186 439 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Viun9g03186 439 MobiDBLite consensus disorder prediction 285 439 - -
Viun9g03186 439 SMART PP2C_4 24 278 IPR001932 -
Viun9g03186 439 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Viun9g03186 439 FunFam probable protein phosphatase 2C 59 26 284 - -
Viun9g03186 439 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Viun9g03186 439 MobiDBLite consensus disorder prediction 285 432 - -
Viun9g03186 439 Pfam Protein phosphatase 2C 63 273 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03186 Viun-Chr9 39114686 39118407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03186 1 292 PP2C-type Phosphatase Gene Family AT4G31750 86.301 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03186 K17506 - vra:106761292 544.658