Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03175 ATGGGAATATATCTCAGCACTCCCAAAATTGAAAAGTTTTCCGAAGATGGTGAAAACGAGCATCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGCGCAACAATGGAAGATGCTCATGCTGCATATACTAATCTGGATGGTTCAACTTCATTTTTTGGTGTCTACGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCGAAGTTTCTCCACCAAGAGGTGCTCAAAAGTAAAGCATACTTAACTGGAGATATTGGAACCTCCCTTCAGAAATCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTATCAATATTGGGGGATAAGATAAACAAGTTTAGTGGGATGATAGAAGGTTTGATTTGGTCTCCAAGAAGCAGTGATGGTAATTGCCGAGTTGATGATTGGGCTTTTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCGGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAGCTTGTTGTTGCAAATGCTGGTGATTCGCGATGTGTGATATCTCGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAGGGACAGAATCTTAAAAGCTGGTGGTTTTATTCACGCTGGACGAGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAGAAACAAATTTTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGAATATGGGATTGCATGTCAAGTCAACAACTTGTAGATTTTATTCATGCCCAATTGTGCACGCAAACCAAACTTTCTGCCGTGTGTGAAACAGTACTTGACCGGTGTTTGGCACCATCAACTGCCGTTGGCGAGGGATGTGACAATATGACCATGATCTTGGTGCAGTTCAAACGACCTGCTCAGTCCAGTGCATCAACAGAAGAGCAATCCTCTTCAACCGGACAAGCTGAACCTGAAACACAACTAGAGAGAAGTGAAAGTTAG 1083 0.4238 MGIYLSTPKIEKFSEDGENEHLRYGLSSMQGWRATMEDAHAAYTNLDGSTSFFGVYDGHGGKVVAKFCAKFLHQEVLKSKAYLTGDIGTSLQKSFLRMDEMMRGQRGWRELSILGDKINKFSGMIEGLIWSPRSSDGNCRVDDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEIERDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQILTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFIHAQLCTQTKLSAVCETVLDRCLAPSTAVGEGCDNMTMILVQFKRPAQSSASTEEQSSSTGQAEPETQLERSES 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03175 360 Gene3D - 1 330 IPR036457 -
Viun9g03175 360 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Viun9g03175 360 MobiDBLite consensus disorder prediction 332 360 - -
Viun9g03175 360 SMART PP2C_4 13 327 IPR001932 -
Viun9g03175 360 CDD PP2Cc 23 329 IPR001932 -
Viun9g03175 360 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Viun9g03175 360 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Viun9g03175 360 PANTHER PROTEIN PHOSPHATASE 2C 23 328 IPR015655 GO:0004722|GO:0006470
Viun9g03175 360 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Viun9g03175 360 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Viun9g03175 360 MobiDBLite consensus disorder prediction 332 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03175 Viun-Chr9 39055247 39062373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03175 1 341 PP2C-type Phosphatase Gene Family AT2G25070 75.367 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03175 K17499 - gmx:100787778 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03175 9 39055247 39062373 Viun9g03175 9 39055247 39062373 ECH
Viun8g00607 8 4627244 4631702 Viun9g03175 9 39055247 39062373 PCT