Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03160 ATGGATGAAAAGGTTGAAATGCTTGAAGCAAAGGTGCGACATATGAAAGAGCAGAATCGTACTCTACGAATGATGCTGGAAACTATGAGCAGAAAATGGCAGAAGCTTCAACTTCATGTTCAAGAGATCAACAATGCACAAGGTTGTCGCCAAAGTTTTTCCACAGCACAAAAGCCATCGCGAATCTTTGTTAAAACCCACCCCAATGACAATAGTGTGATGGTAAAAGATGGTTACCGGTGGAAGAAGTATGGGCAGAAGAAAACTACTAAAGACAATCCTTCACCCAGAGCTTATTACAAGTGCGCGTTGGCTCCTACATGCCCCGTTAAGAAAAAGGTGCAAATAAGCATACAGGATAAGTCTATCATAGTCGCAACTTACGAAGGAAAGCATAACCACGGTTTTGCTTCTCGTGATTTATTGAAGCCATCATCATCGTCTACACCCGAAGTCTCGACAATAATGAATAACGATTTACCTATGACAAACATGTCGAACAACATCAACATCGACCTTTGTCTATGGAATCGTGTAACACTTTGTGATGACGATAAACAGCATAAGGACGGTGGCACTCACATTAAAGTTCAGGAATGTGTTACTTCTCTGCTAAAAGATCCTAACTTTATCGCATCTTTTGCTGAAGCCGTTATTCTCTCCATCAATACTCAGAATAAGCAAGTGGGTCTTAACCTCAGTTTGGGTCTTCCTCAACCACATTTCTTTAAGTAA 735 0.4082 MDEKVEMLEAKVRHMKEQNRTLRMMLETMSRKWQKLQLHVQEINNAQGCRQSFSTAQKPSRIFVKTHPNDNSVMVKDGYRWKKYGQKKTTKDNPSPRAYYKCALAPTCPVKKKVQISIQDKSIIVATYEGKHNHGFASRDLLKPSSSSTPEVSTIMNNDLPMTNMSNNINIDLCLWNRVTLCDDDKQHKDGGTHIKVQECVTSLLKDPNFIASFAEAVILSINTQNKQVGLNLSLGLPQPHFFK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03160 244 SUPERFAMILY WRKY DNA-binding domain 71 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g03160 244 Coils Coil 5 25 - -
Viun9g03160 244 Gene3D WRKY domain 59 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g03160 244 SMART WRKY_cls 75 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g03160 244 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 54 222 IPR044810 GO:0003700
Viun9g03160 244 Pfam WRKY DNA -binding domain 76 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g03160 244 ProSiteProfiles WRKY domain profile. 70 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03160 Viun-Chr9 39001383 39003143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03160 50 226 WRKY Transcription Factor Family AT1G80840 40.838 3.99e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun9g03160 WRKY 9.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03160 - - var:108330510 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00624 8 4776968 4778944 Viun9g03160 9 39001383 39003143 PCT