Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03158 ATGATGGAAGAGTGTCAGACGGTGTTCGGAAAGTACGAGTTGGGGAGGCTTCTGGGGAAGGGGACGTTTGCCAAAGTGTATTATGGGAAGCAGATAAGCACAGGCGAGAGCGTGGCGATCAAAGTAATGAGTAAAGAGCAGGTGCGGAAGGAAGGGATGATGGAACAGATCAAACGCGAAATCTCGGTTATGCGTTTGGTTCGACATCCAAACGTTGTCGAACTCAAAGAGGTGATGGCCACAAAGACAAAAATATACTTCGTCATGGAATACGTCCGTGGCGGCGAACTCTTCGCCAAAATCTCCAAAGGCAAGCTCAAAGAAGATCAGGCCCGCAAATATTTCCAGCAATTGATCAGCGCCGTCGATTACTGCCACAGCAGAGGGGTCTCCCACCGCGATCTCAAACCCGAAAATCTCCTCCTCGACGACGACGAAAACCTCAAAATCTCGGATTTCGGTCTGTCCGCACTGCCCGAACAGCTTCGTTACGACGGACTCCTCCACACACAGTGTGGAACCCCTGCCTACGTGGCGCCGGAAGTCTTGAGAAAAAAGGGTTACGATGGGTCAAAAGCCGATACCTGGTCCTGCGGCGTCGTTTTGTACGTTCTTTTGGCTGGCTTTCTCCCCTTCCAACACGAGAATCTGATGACCATGTATAACAAAGTCCTGAGAGCGGAATTCGATTTCCCACCCTGGTTTTCTCCCGAATCCAAGAGGTTGATCTCCAAGATTCTCGTCGCCGACCCTGCCAAGAGAACCACCATTTCCGCCATCACGCGCGTCCCCTGGTTCCGCAAAGGCCTCCCGTTGTCCTCCGTCGCCGACACATGTCAGGTCGACAACCAAGACACGGTTACGGAGGAACCTAATAGTAATCCCAAGGTTCCCAAGTTCTTCAACGCCTTCGAGTTCATCTCCTCCATGTCGTCGGGCTTTGATCTCTCTGGCCTGTTCGAGACCAAGCGGAAGACGGCCACGGTGTTCACCTCCAAGTGTTCCGCGGTGGCGATTATGGCCAAGATCGCCGCGGCAGCCAGGGGGCTGAGTTTTGCAGTGGCGGAGGTGAAGGACTTCAAGATCCGCCTCCAGGGGACGGCGGTGGGAAGGAAGGGGCGGCTCGCGATCACGGCAGAGGTGTTCGAGGTGGCACCGGAGGTGGCCGTGGTGGAGTTTTCGAAGTCCGCCGGCGATACCTTGGAATACGCCAAATTTTGCGAAGAAGACGTTAGGCCTGCGCTGAAGGACATTGTCTGGACGTGGCAAGGGGATGCCACGTGGGCTGCTAACGTGCCCGGCTGTCACGGTGAGGAGTGTCAAAAGGCGGTCGTTAGCACTGTATAA 1347 0.5471 MMEECQTVFGKYELGRLLGKGTFAKVYYGKQISTGESVAIKVMSKEQVRKEGMMEQIKREISVMRLVRHPNVVELKEVMATKTKIYFVMEYVRGGELFAKISKGKLKEDQARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDDDENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKADTWSCGVVLYVLLAGFLPFQHENLMTMYNKVLRAEFDFPPWFSPESKRLISKILVADPAKRTTISAITRVPWFRKGLPLSSVADTCQVDNQDTVTEEPNSNPKVPKFFNAFEFISSMSSGFDLSGLFETKRKTATVFTSKCSAVAIMAKIAAAARGLSFAVAEVKDFKIRLQGTAVGRKGRLAITAEVFEVAPEVAVVEFSKSAGDTLEYAKFCEEDVRPALKDIVWTWQGDATWAANVPGCHGEECQKAVVSTV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03158 448 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03158 448 CDD STKc_SnRK3 11 265 - -
Viun9g03158 448 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Viun9g03158 448 SUPERFAMILY Protein kinase-like (PK-like) 8 288 IPR011009 -
Viun9g03158 448 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Viun9g03158 448 Pfam NAF domain 298 355 IPR004041 GO:0007165
Viun9g03158 448 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Viun9g03158 448 CDD CIPK_C 302 416 - -
Viun9g03158 448 FunFam Non-specific serine/threonine protein kinase 5 299 - -
Viun9g03158 448 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Viun9g03158 448 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03158 448 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g03158 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Viun9g03158 448 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Viun9g03158 448 Gene3D Transferase(Phosphotransferase) domain 1 92 270 - -
Viun9g03158 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 416 - -
Viun9g03158 448 Gene3D Kinase associated domain 1, KA1 296 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03158 Viun-Chr9 38974143 38976029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03158 3 425 CBL-interacting serine-threonine protein kinases AT5G25110 68.519 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun9g03158 Pkinase 7.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03158 - - gmx:100817520 779.245