Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03152 ATGGCAAACTGTCACCGGAATAGCGTCGGATCCATCGCTCTCGATCACCGACACACGGAGAAAAATGTCACCGCTGGCGGTCACTTCCGCGTGCTCCGCCGCTTGATCTTCGATGCCGTCAGCTGCGGCGGCACCTCCCGCTACAGGTATCGCCAGCGTGGCGGCGGCGAAGGAAACGTCGGTGACTTTAGTTCGGTGGCTAGCCATGCAGAGAAGGAGGAGAGGTCGGAGAAGAGGTCGGAGAAGCTGTCGGATCTGCTGAACGCGGCGGAGATGAAAACGGATGCGGAGGCGGAGAGGAAGGAGGAGGCATTGGCGGAGCTGAAGCGAGTGGTGAAGGAGTTGCGCGAAGAAGACCTCACGATGCGGAGAATCGCGGCGGAGAGAGTGAGGTCGCTGGCGAAGGAAGATTCCGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCTCATTCGCAAATCGCTTCGCTCTATGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATCGGCACTGTACACAAGATGCTGAAGCTAATTGAATTGAGTGATTCAAATTCGTCGGTGGCCGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAGTTGGTTCCTCCGGTGCAATACCGTTCCTAGTTAACACCCTAAAAAAATTAGAGGCTAGTAAAACCGTATCACAATCCCAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCAATATGTCAGAGCAACGTTTCGGTGATTTTGGAGACTGATTTGGTTTGGATTTTAGTGAGCACGATAGGGGACATGGAAGTGAGCGAGAGGAGTCTGGCGATTCTGAACAATTTAGTGTCGACTCCGGAGGGAAGAAAAGCGATCAGTGGTGTGAGCGATGCGATTCCGATTCTGGTGGATGTGTTGAGTTGGACAGACTCGCCAGAGTGCCAAGAGAAGGCATCGTATGTGTTGATGATTATGGCACACAAAGCTTACGGGGACAGAAGGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTGCTTGAGTTGACGCTTGTCGGAACCACGTTAGCACAGAAGAGAGCCTCAAGAATATTGGAGTGTTTGAGGGTGGACAAAGGGAAACAGGTTTCAGGGAGCTACGCTGCAAACTTGAATTTGGGTGTCTCCGCTCCTATTTGTGGTGGCTCTTCTTCCTCTGAGGGTGGTGGTGGAGGAGGAAGAGGGTCCTTGGCGGAGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCGGTGAAACAGTTAGTGCAGCAAAGTCTGCAGAATAACATGATCAAAATCGTGAAGAGGGCCAACTTGCGTCAGGATTTCGTCCCATCTGCCCAAATTGCTTCACTCACTTCGAGTTCCACTTCCAAGAGCCTCCCATTTTGA 1491 0.5158 MANCHRNSVGSIALDHRHTEKNVTAGGHFRVLRRLIFDAVSCGGTSRYRYRQRGGGEGNVGDFSSVASHAEKEERSEKRSEKLSDLLNAAEMKTDAEAERKEEALAELKRVVKELREEDLTMRRIAAERVRSLAKEDSEARANLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGTVHKMLKLIELSDSNSSVAEAIVANFLGLSALDSNKPIVGSSGAIPFLVNTLKKLEASKTVSQSQSQVKQDALRALYNLSICQSNVSVILETDLVWILVSTIGDMEVSERSLAILNNLVSTPEGRKAISGVSDAIPILVDVLSWTDSPECQEKASYVLMIMAHKAYGDRRAMIEAGIVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYAANLNLGVSAPICGGSSSSEGGGGGGRGSLAEEEDGMMMSEEKKAVKQLVQQSLQNNMIKIVKRANLRQDFVPSAQIASLTSSSTSKSLPF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03152 496 SMART arm_5 179 221 IPR000225 GO:0005515
Viun9g03152 496 SMART arm_5 272 310 IPR000225 GO:0005515
Viun9g03152 496 SMART arm_5 222 271 IPR000225 GO:0005515
Viun9g03152 496 SMART arm_5 137 177 IPR000225 GO:0005515
Viun9g03152 496 SMART arm_5 311 353 IPR000225 GO:0005515
Viun9g03152 496 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 496 - -
Viun9g03152 496 Coils Coil 73 121 - -
Viun9g03152 496 Gene3D - 62 249 IPR011989 -
Viun9g03152 496 Gene3D - 250 405 IPR011989 -
Viun9g03152 496 SUPERFAMILY ARM repeat 109 394 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03152 Viun-Chr9 38885763 38887841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03152 99 400 U-box Gene Family AT1G67530 30.421 3.07e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03152 - - gmx:100796229 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00693 8 5551499 5554043 Viun9g03152 9 38885763 38887841 PCT