Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03143 ATGAGTAGTTTGGTGGAGAGGCTACGCGTAAGATCAGATCGCAGGCCAATTTATAATCTTGACGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAATCCGGGACAACACAGGAAAAGTTGGAGAGAATAGTGAGAACTGATGCGAAAGAGGATTTATGTCAAGCCTGCGGTGAAAATGAAAATCTTGTGAGTTGTGAAACTTGCACTTATGCTTACCATCCTAGGTGTTTACTTCCACCCCTTAAAGGACCCCTTCCAGACAACTGGAGATGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAGATGCGACCTACTACTGCTGCTGACAATGATGCCACAAAATTAGGGTCAAAACAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAAGGCCTATCATATCTGCACTGCACATGGGTGCCGGAGAAAGAGTTTTTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTATCAATACTTCTGATGATGACTTTGTTGCCATTCGACCTGAATGGACTACAGTTGACCGGATACTTTCTTGCAGGGGTGATGATGATGAGAGAGAATACCTTGTGAAGTGGAAGGAACTTCCATATGATGAGTGTTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTTCGGTCTAGATCCAGTAAATTTTCTTCTAGTAAACATAAACAGAGTGTTAAAGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTATGAACACAGCCCTGAGTTTCTCTCAGGTGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGAAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGGGTGTCTACCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGAAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAAAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATCAACTTTGACACAACATCACTCAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGTCTGAAAAATAAGGATTCTAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACCGGAACTCCTCTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCTCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTCTACGTATTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGCGGAAGCTTTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGATGCAAAAGAAGCATACAAACAGCTATTGGAATCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACATAGAGTCCTTATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAGAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACTGCTGACACGGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAGAGGATGATGCAGATGACCAAGAAGAAAATGGTTTTAGAACACCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAATTGGATGACATTATAAGATATGGATCAAAGGAGTTATTTGCAGATGAGAATGACGAAGCTGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGATGAGGAAGAAGATGGATTTCTGAAAGCTTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCGCCCAAAAAAGAGCATTAGAGAATGTAAACAGTTCGGAGAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGAAAAGGGAAGCGTAATCGGAAGCTGATGGTTTCTGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTTAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAACTTACTGATGGGGATTCAAATTCCACTGGGACTGGAACTACTACTGCTAGAAGGCCTTATAAGAAAAAAGCTCGCACAGATAGCACAGAGCCTCTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCTCATATCTCTGAAGATATAACCGAGTCCTCTACATTCACAGATGGTGTACCAAAAGATGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTTTGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATCTTATTACGCTATCCAGGTTTGAAGGGAGCGAAGATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTTCTGTTTTAAAGCATGGTTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGTTCTCAGCCACAAAATGGTGCAAATTTGACAAATGCCGAAGTACCCAACAATCAATCTAGAGAAAATGGTGGAAGTGATATACCAGCCGATGGTGCGCAGGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAGTACTTTGGCGATCCAAAATCAAATGACGAACTTAAAAGTGAACCCAAGGCTCCTAAATTAGTGGAAACTGACACCCAAATGATTGATCAACTACCGCAAGTAGAAACTATAGCTACAGAAGAAATTTCGGCTGCTTGTGATAGTGATCCTAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGATAGTCGAGGAAAACCCCATGGATGTGCAAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCTCACCACTAGAAACCATTTGCAAAGACATCAACAGAATTCTAACACCCACAGAAGAACAATCTGCTGCGGATATTCCAATGTCAAATTCAGAGAACAAATCAGAGGTTATGTCGCAGAGCGAGATTTTGGGCGCCAAATCACTGCCAACCCCTCAAGACTCCGCAAACAATGAGAGTAAAGATATGATAATAGAATCTGAACCTATAAAAGAAAGCTGCTCAAGCCTGGTAAAAGATACGAATGAAATACAGACTCTTCCGGACAAAGAGAAAAGTAATACTATAATGGATGAAACTATGACTGATGCTCAGTAG 4251 0.4041 MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKSGTTQEKLERIVRTDAKEDLCQACGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASINTSDDDFVAIRPEWTTVDRILSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAAQKRALENVNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHISEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQPQNGANLTNAEVPNNQSRENGGSDIPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSEPKAPKLVETDTQMIDQLPQVETIATEEISAACDSDPNRLELVRLYNEMCKIVEENPMDVQVQTSLAREPAELHVGKNFSPLETICKDINRILTPTEEQSAADIPMSNSENKSEVMSQSEILGAKSLPTPQDSANNESKDMIIESEPIKESCSSLVKDTNEIQTLPDKEKSNTIMDETMTDAQ 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03143 1416 Gene3D - 529 753 IPR027417 -
Viun9g03143 1416 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Viun9g03143 1416 MobiDBLite consensus disorder prediction 1331 1371 - -
Viun9g03143 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 519 IPR027417 -
Viun9g03143 1416 Gene3D - 189 241 - -
Viun9g03143 1416 SUPERFAMILY Chromo domain-like 66 178 IPR016197 -
Viun9g03143 1416 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 51 1375 - -
Viun9g03143 1416 CDD CD2_tandem 190 239 - -
Viun9g03143 1416 Pfam CHD subfamily II, SANT-like domain 936 1069 IPR009462 GO:0003677|GO:0006338
Viun9g03143 1416 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Viun9g03143 1416 SMART DUF1087_2 839 906 IPR009463 -
Viun9g03143 1416 MobiDBLite consensus disorder prediction 905 955 - -
Viun9g03143 1416 SMART helicmild6 638 722 IPR001650 -
Viun9g03143 1416 CDD SF2_C_SNF 607 733 - -
Viun9g03143 1416 SMART PHD_3 53 96 IPR001965 -
Viun9g03143 1416 SMART DUF1086_2 916 1072 IPR009462 GO:0003677|GO:0006338
Viun9g03143 1416 CDD CD1_tandem 98 171 - -
Viun9g03143 1416 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Viun9g03143 1416 MobiDBLite consensus disorder prediction 924 938 - -
Viun9g03143 1416 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Viun9g03143 1416 Gene3D - 98 188 - -
Viun9g03143 1416 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Viun9g03143 1416 SMART ultradead3 282 495 IPR014001 -
Viun9g03143 1416 Coils Coil 838 861 - -
Viun9g03143 1416 MobiDBLite consensus disorder prediction 1136 1175 - -
Viun9g03143 1416 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Viun9g03143 1416 MobiDBLite consensus disorder prediction 905 923 - -
Viun9g03143 1416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Viun9g03143 1416 Gene3D - 1039 1219 - -
Viun9g03143 1416 Pfam CHD subfamily II, DUF1087 845 903 IPR009463 -
Viun9g03143 1416 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Viun9g03143 1416 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Viun9g03143 1416 Pfam PHD-finger 54 96 IPR019787 -
Viun9g03143 1416 Gene3D - 278 528 IPR038718 -
Viun9g03143 1416 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Viun9g03143 1416 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Viun9g03143 1416 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Viun9g03143 1416 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Viun9g03143 1416 MobiDBLite consensus disorder prediction 1136 1161 - -
Viun9g03143 1416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Viun9g03143 1416 SMART chromo_7 99 162 IPR000953 -
Viun9g03143 1416 SMART chromo_7 190 244 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03143 Viun-Chr9 38819846 38838784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03143 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.561 5.66e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g03143 SNF2_N 1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03143 K11643 - gmx:100790230 2536.52