Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03138 ATGACTGTGGAGAAGAGAATGAGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATGACCCCATCTGCCTCATGGTTTTGGAAAACCTTCTCCGGAAATGTCAATATCATGTAACTACGACAAATCAAGCAATAACAGCGTTGGCGCTTTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTCGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCTTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAAGAGAAGAACAAAACAAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCGTCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGACGACCCGTCAACCCAGAAGAAACCTCGGGTGGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAACGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAGAGAATTAGTTGCGTGGCTAACCAACAGGCTAACATGGTAGCGGCCTTAGGGGGTGCAGATCCATCTTATCTGAGAATGAGTTCTGTGAATGGGGTTGGACATTTACAAACATTGAGTGGTTCTGGGCAGCTTCATAACAATGGTTTTAGATCCTTTCCACCTGGTGGGATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCACGGATTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATGATCATCTGAAGTTCCGGTCAGCCATCACTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCATTGTCTGTTCAGAACAATAAGAGTCTCATTTCTGTTCAAAATTTGACCTCTGTTTTTAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAATAACATCTGTCTCTCGCACTTCAGATGTAGGTATCTCAAACAATGCCTTGATGTTGGAACCATGCCCTCAAGGCACACAAGGGAGTGTAAGGATTGAAACTTTATCTTCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGGTATAATGATAGTTGGACAAGTGCGGTGCAGCCACCTGTGATCCAGACAAACTCTTACCCTCCTAGTGAATGTTTTAAACCGACAAATATACCACCTCCAGATAACATGGCTACTATACCCCTGCAAGGTGGGAATCTGACTGGTTCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATGACAGATATGCATTCTGAAGGATTGACTTTAACTAACAGACCTGGGAATATAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCGTAATCACGATGCTACTCATCATTCAAATAATATGTTTGCATCAATAAACTCACTGACTGCAGTCAATGGTGCTACTGTTCCAACGGGCCATGCAGCAGCAAACTCAGCCACACAGAGAAATTTGGACTTTAACTTTTGTGATCCCTTACAAATGAAGCATGACGGGTTTGTGGAATTAACTGAAGAGATCTCATCCAAACAACATCAGGCGAATATCCTGAACCAGCAGAAGTCTCAACATAGTCATTTCTCTAATAATCTTGGTTCATTGGAAGATTTGGTCAGTTCAATGATGAAACAGGAGAAAGACAGGCTGAAGTTATTGGATGAAAACCTCATTTGCGATAATTACCCTGGTGGGTTATCTATGTGA 2031 0.4279 MTVEKRMSDSGEEFPVGMRVLAVDDDPICLMVLENLLRKCQYHVTTTNQAITALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVNGVGHLQTLSGSGQLHNNGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNDHLKFRSAITPVNQNGVQGMPLSVQNNKSLISVQNLTSVFNAKTNFPISNKLPDPRPKITSVSRTSDVGISNNALMLEPCPQGTQGSVRIETLSSSVASQHSEFSLPLLDQGRYNDSWTSAVQPPVIQTNSYPPSECFKPTNIPPPDNMATIPLQGGNLTGSSITSLSRQSHDSMTDMHSEGLTLTNRPGNISSNVPFQGWDDRNHDATHHSNNMFASINSLTAVNGATVPTGHAAANSATQRNLDFNFCDPLQMKHDGFVELTEEISSKQHQANILNQQKSQHSHFSNNLGSLEDLVSSMMKQEKDRLKLLDENLICDNYPGGLSM 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03138 676 PIRSF RR_ARR_type-B 1 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Viun9g03138 676 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Viun9g03138 676 FunFam Two-component response regulator 200 263 - -
Viun9g03138 676 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Viun9g03138 676 CDD REC_typeB_ARR-like 20 134 - -
Viun9g03138 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Viun9g03138 676 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Viun9g03138 676 MobiDBLite consensus disorder prediction 151 171 - -
Viun9g03138 676 Gene3D - 200 263 - -
Viun9g03138 676 MobiDBLite consensus disorder prediction 141 204 - -
Viun9g03138 676 Coils Coil 609 629 - -
Viun9g03138 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Viun9g03138 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 384 IPR045279 GO:0009736
Viun9g03138 676 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Viun9g03138 676 Coils Coil 172 192 - -
Viun9g03138 676 SMART REC_2 18 130 IPR001789 GO:0000160
Viun9g03138 676 Gene3D - 17 153 - -
Viun9g03138 676 SUPERFAMILY CheY-like 17 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03138 Viun-Chr9 38813454 38817971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03138 1 448 Response Regulator Gene Family AT2G25180 52.421 9.07e-133 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun9g03138 Response_reg 4.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03138 - K14491 gmx:100809002 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03138 9 38813454 38817971 Viun9g03138 9 38813454 38817971 ECH
Viun8g00700 8 5653802 5657931 Viun9g03138 9 38813454 38817971 PCT