Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03137 ATGGAAACACGGAGCCACCAGGCTCCCTTCTGTGATCGCCTTTCTGCTGCAGTGATTCAAGAGGGAAAAAAAGATACTTTGCTGGATCTAAATCTCCCTGGTGATGATTCTGCTTCTGGGTGCACTCCAGCGCTGAATCTCATCACTTGTCTGGACATGGATTTGTCGTCCGAAAACCCTCATGAGCCAAGGGTCTTCTCTTGCAACTACTGTCAGAGGAAGTTCTACAGTTCACAGGCACTCGGTGGACACCAGAATGCTCACAAGAGAGAAAGGTCCATAGCCAAGAAAAGTCACAGAGCAGTATCATCCATGGTGGCCGCCCCAGGAACAGCTTATGGAATTCCCTTCCTCCACAATCACCTTCCTCACCTTCCTCACTATCACACTGTGCCTTCTCTGCCTCTCCATGCGGTTTGTGGTAACAAACCATTTGGAATTCGGACTCACTGCATGATTCACAGGCCTCCTCCTCTCCTTGTTCCTCCTCCTCCTCATTTCTCATTCAATGCTTTTGGACATCCTCGTGGCTGGCCAAGACCCCTTATTACTCAACAACCTGCGATAGGGAGGTTAACTGTGGAAAGTTGTCGCAAAACATCACGAGACAACAACGGTGGCAGATTAGAACTCAACAATTCAGCAGGTAATGAAGAAATAAGTGAACATCTGGCTGGTGAAAACACTGGTTTGAAGACTGGTCAAGAGAAGAAGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 744 0.4798 METRSHQAPFCDRLSAAVIQEGKKDTLLDLNLPGDDSASGCTPALNLITCLDMDLSSENPHEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKKSHRAVSSMVAAPGTAYGIPFLHNHLPHLPHYHTVPSLPLHAVCGNKPFGIRTHCMIHRPPPLLVPPPPHFSFNAFGHPRGWPRPLITQQPAIGRLTVESCRKTSRDNNGGRLELNNSAGNEEISEHLAGENTGLKTGQEKKKHLDLSLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03137 247 MobiDBLite consensus disorder prediction 232 247 - -
Viun9g03137 247 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Viun9g03137 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 247 IPR044246 GO:0009788
Viun9g03137 247 Gene3D Classic Zinc Finger 51 110 - -
Viun9g03137 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Viun9g03137 247 FunFam Zinc finger protein 2 49 111 - -
Viun9g03137 247 MobiDBLite consensus disorder prediction 199 247 - -
Viun9g03137 247 SUPERFAMILY beta-beta-alpha zinc fingers 63 94 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03137 Viun-Chr9 38803305 38804550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03137 20 247 C2H2 Transcription Factor Family AT5G10970 36.546 8.25e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g03137 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03137 - - vra:106761491 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00702 8 5691182 5692709 Viun9g03137 9 38803305 38804550 PCT