Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03134 ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTCGGAACGTTTGAAACTGCTGAGGATGCAGCCCGAGCCTACGATGAAGCAGCAAGGCTAATGTGTGGCACAAGGGCAAGAACAAATTTCCCTTACAACCCAAATGCATCTCAGTCATCATCCTCGAAGCTTCTATCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATCACAAGGCCATCATCACTACCCGAGCCTCAGAGAGTGGCTTCACCAAATGCCATCACCTCTACAAGTAACGAAACTAAAACAATGTTGCCACAGAAGAGAGCACAGGAGGAGCAAGAAGTGGAGGAGAATTGGGTTCTGAAGAAGGTTAAGGTGGAAAGGACTCAGCAGTTCAAGCCTCTTGAAGAGGACCACATCGAACAAATGATAGAGGAGTTGCTGCATTATGGCACTATTGAGCTTTGCTCTGTGATTCCCCACCACAGACTCTTTTAA 561 0.4688 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQITRPSSLPEPQRVASPNAITSTSNETKTMLPQKRAQEEQEVEENWVLKKVKVERTQQFKPLEEDHIEQMIEELLHYGTIELCSVIPHHRLF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03134 186 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Viun9g03134 186 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Viun9g03134 186 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Viun9g03134 186 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Viun9g03134 186 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Viun9g03134 186 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Viun9g03134 186 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Viun9g03134 186 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Viun9g03134 186 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Viun9g03134 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03134 Viun-Chr9 38771527 38772613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03134 1 185 AP2-EREBP Transcription Factor Family AT5G25190 65.957 2.68e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun9g03134 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03134 - - gmx:100804510 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03134 9 38771527 38772613 Viun9g03134 9 38771527 38772613 ECH
Viun8g00710 8 5801401 5802557 Viun9g03134 9 38771527 38772613 PCT