Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03125 ATGGATCAAGATAGAGGTGAGGTATTGGATCCGGTTCATGACAAGAGTTCAAGTCATTTGGTTGAACGGGTTGCAATTGCTAGCGATAGTATAAGTGAAGAAGCTGGAACTTCGAGACGGGTCGATGAGAATTCAGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGGGTCAAGACAAGCATGGTCGAGAAAATTCCAGTGATAAGGTACCTGGGGTTGATCAGGGAACTAGTTGTAATTCAAACCATTTTGTTAATCAAGAAGTGATTGAAAGTGTGATTGTGATTGAGTCTATTCGGACTGAGTACATGAATGAAGATAATAGGAAATTGGAAGTAAAAGTTGAGGAATCGGGGTTGAGCTTGGGGTCCATGAAGGCAGCAAAAGAGGTGACTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTATATGACAATTCTGAAGGTGAAACGATTTGCAGGATTTGCCATCTGACTTCTGATCAATCACCGGATGTAACAATTGTTGGCACTGCTACTAGTGCTACAAGAGTAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAACTAGGCATCGCGCACGTTCACTGTGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGTGAGCCTGCAAAAAACGTTTCAGGTGTTAGCAGTAATGGGTTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAACTCATCCCCAAGAATTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTGATAGCCTTTGTTCTGCCTTGGTTTTTTCGTGTAAATATGTTCTAG 870 0.4207 MDQDRGEVLDPVHDKSSSHLVERVAIASDSISEEAGTSRRVDENSGSDKELKEEVKGQDKHGRENSSDKVPGVDQGTSCNSNHFVNQEVIESVIVIESIRTEYMNEDNRKLEVKVEESGLSLGSMKAAKEVTETDKSSCVIDIKCSSHKKLYDNSEGETICRICHLTSDQSPDVTIVGTATSATRVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVSSNGFIEEWNERRFMDNDGNSSPRIVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03125 289 PANTHER ZINC FINGER, RING-CH-TYPE 40 289 - -
Viun9g03125 289 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g03125 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 235 IPR013083 -
Viun9g03125 289 MobiDBLite consensus disorder prediction 1 80 - -
Viun9g03125 289 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
Viun9g03125 289 SMART ringv_2 160 223 IPR011016 GO:0008270
Viun9g03125 289 SUPERFAMILY RING/U-box 155 225 - -
Viun9g03125 289 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
Viun9g03125 289 MobiDBLite consensus disorder prediction 35 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03125 Viun-Chr9 38710609 38713438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03125 141 288 C3H Transcription Factor Family AT5G05830 40.523 1.58e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03125 - - gmx:100776373 437.958