Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03112 ATGGGAAAGCCCTCAGGGAAGAAGAAGGATATCGCTACCCCGGGTGCTGCAAATTCACATGCCAAACATGCCAAGTCTTCCAAAGCTTTCGATGAAGATACAGCAATGTTCATTAACATGTCACAAGAGTTCAGGGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGATCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTGAAGCTGCTTCCGAAGAACCACATAGATGTCGCACACCTTCATACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGAAGTGTCTCCAAGGTACAGCAAAGCTATTCTGAAAAGAGCCACATGCTATCGTGAGCTTAATCGCTCGGATTTGGCGCTAAGGGATGTTAATCTTGTTTTGAGCATGGAGCCAAATAACCTCACCGCGTTGGAGCTTCTCGAGAGCCTCACGAAGTCAACGGAAGAAAAGGGGGTCTCTGTTGATGATAAAAGGATGGCTTTTGATACAACCGTTTATCACTCTCCTTCTCGTTCTTCGCAAAAACTGAAGAAGAAGAGAGGTAAAAAAATTGTGGACAAGGTGGTTGTGGAGGAAAAGCCGGGTGTCATTGTTGAGGATAAAAAGGTGGTTTCCAAAACAATTGGGCAAGAAGGCAAGGTGGATTCCGAAACAATTGGGCAAGAAGACAAGGTGGTTTCAAAAACAATTGAGCGAGTAAAAGAGGTGGATTCAAAAGCAATTGAGCAAGAAAAAAAGGTGGTGGAAGTCAAACCTGTGGAGGAAGAAAAACATGCCACGATCACAAGGAGCGTGAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCAATTACCCGTGAATTGTAGTGCGAAGTTGGTGAGGGATATAGCTAGGAACCGGTTTCCAGGTTTGAAGGGAGTTCTTGTGAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAACTAAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAACAACAACCAATGAGGACGAGGTGCAAAGGGAGGGTGGAAATGAAAATGGTGGTGTTGAGAATAGGGGTACGGAAGAAGGCAGAGATGAAGATGCTGCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAGGATACCGTAGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTTCAAGAGATGGCTGCCTTGGCACTGTTTAATTGGGGAAGTGTTCAGATGTCCAGGGCAAGGAATCAAGGTTCCTTTTCGGAGGATGGGGCTAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTGGCACGAAAGGAGTACGAGAAAGCAGAATTGAGATATGAAGAAGCCTTGAAAATCAAACCTGATTTCTATGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGACTCAAATGCTGGCTTTTCTGAGGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAGAGAACAGTTAGAGAAAATGGGCTTGGATGGTCTTTTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACACCTACTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCTGTTGAAAAATTTGAACTAGCTGGAACTTCTGGAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTAGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCATATTGGAGCAGTTTTAA 2214 0.439 MGKPSGKKKDIATPGAANSHAKHAKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPRYSKAILKRATCYRELNRSDLALRDVNLVLSMEPNNLTALELLESLTKSTEEKGVSVDDKRMAFDTTVYHSPSRSSQKLKKKRGKKIVDKVVVEEKPGVIVEDKKVVSKTIGQEGKVDSETIGQEDKVVSKTIERVKEVDSKAIEQEKKVVEVKPVEEEKHATITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARNRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGTTTNEDEVQREGGNENGGVENRGTEEGRDEDAAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGSFSEDGARESSLEHIKAAYELARKEYEKAELRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYALACKDSNAGFSEEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYREQLEKMGLDGLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFSDPSFRLEPLFRRRVPKLHSILEQF 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03112 737 MobiDBLite consensus disorder prediction 358 396 - -
Viun9g03112 737 PANTHER PROTEIN CLMP1 1 735 IPR044517 -
Viun9g03112 737 ProSiteProfiles PB1 domain profile. 277 356 IPR000270 GO:0005515
Viun9g03112 737 SMART PB1_new 277 356 IPR000270 GO:0005515
Viun9g03112 737 SUPERFAMILY CAD & PB1 domains 275 365 - -
Viun9g03112 737 CDD PB1 280 353 - -
Viun9g03112 737 SUPERFAMILY TPR-like 41 551 IPR011990 GO:0005515
Viun9g03112 737 Coils Coil 497 524 - -
Viun9g03112 737 Gene3D - 262 356 - -
Viun9g03112 737 Gene3D Tetratricopeptide repeat domain 33 178 IPR011990 GO:0005515
Viun9g03112 737 SMART tpr_5 115 148 IPR019734 GO:0005515
Viun9g03112 737 SMART tpr_5 495 528 IPR019734 GO:0005515
Viun9g03112 737 SMART tpr_5 79 114 IPR019734 GO:0005515
Viun9g03112 737 SMART tpr_5 41 74 IPR019734 GO:0005515
Viun9g03112 737 Pfam PB1 domain 277 354 IPR000270 GO:0005515
Viun9g03112 737 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Viun9g03112 737 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03112 Viun-Chr9 38613584 38618432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03112 25 148 Calmodulin-binding Proteins AT3G25230 30.075 1.03e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03112 K26538 - gmx:100805760 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00750 8 6464732 6468928 Viun9g03112 9 38613584 38618432 PCT