Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03088 ATGGAACTTCAGTTAGGTCTTGCTCTCTCTACCGCTGAGGAATTCAAGTCCAAACAAATAGTGAGTTCAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGTGGAAAACATGTCAAACACAAGCGCAACTTTGAAGAGTCCTTTCAACGTTTTCTGAAACCTTTCCCTTTACTAGTATGGAGTGGCCAGCCAAATGAAGAAGATGACCGTAGTCAAAAACTGCGTAGAAACATTCACACACCCAACAAGAACGGTAATGAAGAAAACCATTTGGTGGGGTGGCCACCAGTGAAATCATGGAGAAGGAAAGAACTTCATCAGCATCATCCTGGAAGAGGCGAAATCAGGAACGTTGGGATTCAAAATCAAAGTAGAGGACCAAACTCTTTATATGTCAAGGTTAACATGGAAGGAGTAACCATAGGAAGGAAAATCAATTTGAGGCTTTTCAACTCGTATAAAACACTTACAAACGCCTTGATCAACATGTTTGCTAAATACCAAAAATTGGAGGAAGCTGGAGAAAGTTACACACTCACCTTTCGAAACGAGCAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCATTTGTTGATACAGTGCGGCGTTTGGTGCTACTGAAGAATGGAAGTGAAACTATTTGA 651 0.4194 MELQLGLALSTAEEFKSKQIVSSELWRPSCGSESGKHVKHKRNFEESFQRFLKPFPLLVWSGQPNEEDDRSQKLRRNIHTPNKNGNEENHLVGWPPVKSWRRKELHQHHPGRGEIRNVGIQNQSRGPNSLYVKVNMEGVTIGRKINLRLFNSYKTLTNALINMFAKYQKLEEAGESYTLTFRNEQGDWLQVGHVPWQSFVDTVRRLVLLKNGSETI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03088 216 ProSiteProfiles PB1 domain profile. 129 216 IPR000270 GO:0005515
Viun9g03088 216 Gene3D - 125 215 - -
Viun9g03088 216 Coils Coil 153 173 - -
Viun9g03088 216 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 211 IPR003311 GO:0005634|GO:0006355
Viun9g03088 216 Pfam AUX/IAA family 2 168 IPR033389 -
Viun9g03088 216 Pfam AUX/IAA family 174 214 IPR033389 -
Viun9g03088 216 SUPERFAMILY CAD & PB1 domains 125 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03088 Viun-Chr9 38449975 38451316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03088 132 208 B3 DNA Binding Superfamily AT3G61830 29.870 1.08e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun9g03088 AUX_IAA 4.4e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03088 K14484 - gmx:100802759 355.14