Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03023 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTATATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCTAGGACCAACGAGAAACACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAACAGCAGCAACCACAATCCCAGCAGTCACAACATCAACAACAGCAACAGCAACAACAACACATGCAGATGCAACAGCTCCTCTTGCAGAGAGCACAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAACAACAGCAGCAGCAACAACAGCAATCACAACAACAACAGCCTCAACCACAACAACAACAAAGCAGGGATAGGGCTCACCTTTTAAATGGTAGTGCAAATGGATTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTAGATGATGCGGCACTGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCAGCCCCTGGCCAACCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGTTCAAGCACGTACTCAGCAATTACCAGGGTCTACTCTGGATATTAAAGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAGAGGGTGGCCACTCACTGGTTTGGAGCAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCACAGCCTTTTCATCAAATCCAAATGTTGACACCACAGCATCAGCAACATCTTATGCTAGCACAACAAAATTTGGCGTCGCCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTTTTGAGTAATAGGGGTATTGGACTAAATAAGGACGGTCTTTCAAATCCGGTTGGTGATGTGGTATCTAATGTTGGATCACCTCTTCAAGGTGGTGGTCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGGTGAAGCTGGCTCAGCTACAGCAGCAACATCAACAACATTCAAGTACCAATGCACAGCAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAACAATCCCAAACTTCTAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTGGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGGAGAAAAAGAAAGCAGCCTGGATCATCGTCGGGTCCTGCCAATAGTACAGGCACAGCAAATACGACAGGTCCATCGCCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGATGTGATATCGATGCCTGCTTTGCCCAATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTCCAGGAGCCCTTACATCACCTTCTAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCGCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTACTGATGTAAGTTCTGTACGGGCAAGCACAAGTAAAGTTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGGCACGATAAAAAGGCTGTTTTATGGTACACGGATTCTCTTAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTTCGGTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGCTATTCTCTTCGCACCTTCACGGGACATTCTTCAACTGTCATGTCACTAGATTTTCATCCAAATAAGGATGACCTCATCTGCTCATGTGACGGCGATGGTGAGATACGATACTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTGGAAGGGTGGCACCACCCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGTGTGCCGATATTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTAGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTATTGGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAACTCTGGAAGTGA 2685 0.4559 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQSQQSQHQQQQQQQQHMQMQQLLLQRAQQQQQQQQQQQQQQQQQQQQSQQQQPQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAALKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQVQARTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGSNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQIQMLTPQHQQHLMLAQQNLASPSATEESRRLRMLLSNRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQHSSTNAQQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGGMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGPGALTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFTDVSSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSSTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03023 894 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 894 - -
Viun9g03023 894 Gene3D - 588 736 IPR015943 GO:0005515
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 817 IPR001680 GO:0005515
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Viun9g03023 894 MobiDBLite consensus disorder prediction 413 454 - -
Viun9g03023 894 SUPERFAMILY WD40 repeat-like 608 894 IPR036322 GO:0005515
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Viun9g03023 894 Gene3D - 737 894 IPR015943 GO:0005515
Viun9g03023 894 Coils Coil 114 149 - -
Viun9g03023 894 FunFam Transcriptional corepressor LEUNIG 738 894 - -
Viun9g03023 894 SMART Lish 8 40 IPR006594 GO:0005515
Viun9g03023 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Viun9g03023 894 Pfam WD domain, G-beta repeat 649 684 IPR001680 GO:0005515
Viun9g03023 894 Pfam WD domain, G-beta repeat 773 808 IPR001680 GO:0005515
Viun9g03023 894 Pfam WD domain, G-beta repeat 611 641 IPR001680 GO:0005515
Viun9g03023 894 Pfam WD domain, G-beta repeat 857 894 IPR001680 GO:0005515
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Viun9g03023 894 MobiDBLite consensus disorder prediction 413 544 - -
Viun9g03023 894 MobiDBLite consensus disorder prediction 90 109 - -
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 651 IPR001680 GO:0005515
Viun9g03023 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun9g03023 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Viun9g03023 894 SMART WD40_4 731 767 IPR001680 GO:0005515
Viun9g03023 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Viun9g03023 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Viun9g03023 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Viun9g03023 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Viun9g03023 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Viun9g03023 894 Pfam LisH 10 36 IPR006594 GO:0005515
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Viun9g03023 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
Viun9g03023 894 MobiDBLite consensus disorder prediction 466 525 - -
Viun9g03023 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Viun9g03023 894 CDD WD40 610 894 - -
Viun9g03023 894 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03023 Viun-Chr9 38023959 38032403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03023 689 893 Miscellaneous Gene Families AT5G08390 23.810 5.96e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun9g03023 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03023 - - pvu:PHAVU_009G096600g 1363.98