Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03022 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTATATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCTAGGACCAACGAGAAACACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAACAGCAGCAACCACAATCCCAGCAGTCACAACATCAACAACAGCAACAGCAACAACAACACATGCAGATGCAACAGCTCCTCTTGCAGAGAGCACAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAACAACAGCAGCAGCAACAACAGCAATCACAACAACAACAGCCTCAACCACAACAACAACAAAGCAGGGATAGGGCTCACCTTTTAAATGGTAGTGCAAATGGATTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTAGATGATGCGGCACTGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCAGCCCCTGGCCAACCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGTTCAAGCACGTACTCAGCAATTACCAGGGTCTACTCTGGATATTAAAGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAGAGGGTGGCCACTCACTGGTTTGGAGCAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCACAGCCTTTTCATCAAATCCAAATGTTGACACCACAGCATCAGCAACATCTTATGCTAGCACAACAAAATTTGGCGTCGCCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTTTTGAGTAATAGGGGTATTGGACTAAATAAGGACGGTCTTTCAAATCCGGTTGGTGATGTGGTATCTAATGTTGGATCACCTCTTCAAGGTGGTGGTCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGGTGAAGCTGGCTCAGCTACAGCAGCAACATCAACAACATTCAAGTACCAATGCACAGCAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAACAATCCCAAACTTCTAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTGGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGGAGAAAAAGAAAGCAGCCTGGATCATCGTCGGGTCCTGCCAATAGTACAGGCACAGCAAATACGACAGGTCCATCGCCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGATGTGATATCGATGCCTGCTTTGCCCAATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTCCAGGAGCCCTTACATCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCGCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTACTGATGTAAGTTCTGTACGGGCAAGCACAAGTAAAGTTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGGCACGATAAAAAGGCTGTTTTATGGTACACGGATTCTCTTAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTTCGGTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGCTATTCTCTTCGCACCTTCACGGGACATTCTTCAACTGTCATGTCACTAGATTTTCATCCAAATAAGGATGACCTCATCTGCTCATGTGACGGCGATGGTGAGATACGATACTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTGGAAGGGTGGCACCACCCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGTGTGCCGATATTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTAGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTATTGGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAACTCTGGAAGTGA 2712 0.4554 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQSQQSQHQQQQQQQQHMQMQQLLLQRAQQQQQQQQQQQQQQQQQQQQSQQQQPQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAALKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQVQARTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGSNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQIQMLTPQHQQHLMLAQQNLASPSATEESRRLRMLLSNRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQHSSTNAQQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGGMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGPGALTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFTDVSSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSSTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 746 IPR001680 GO:0005515
Viun9g03022 903 FunFam Transcriptional corepressor LEUNIG 747 903 - -
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 696 IPR001680 GO:0005515
Viun9g03022 903 Gene3D - 597 746 IPR015943 GO:0005515
Viun9g03022 903 Gene3D - 747 903 IPR015943 GO:0005515
Viun9g03022 903 SMART WD40_4 864 903 IPR001680 GO:0005515
Viun9g03022 903 SMART WD40_4 740 776 IPR001680 GO:0005515
Viun9g03022 903 SMART WD40_4 697 737 IPR001680 GO:0005515
Viun9g03022 903 SMART WD40_4 779 817 IPR001680 GO:0005515
Viun9g03022 903 SMART WD40_4 654 693 IPR001680 GO:0005515
Viun9g03022 903 SMART WD40_4 612 651 IPR001680 GO:0005515
Viun9g03022 903 SMART WD40_4 823 862 IPR001680 GO:0005515
Viun9g03022 903 Pfam WD domain, G-beta repeat 782 817 IPR001680 GO:0005515
Viun9g03022 903 Pfam WD domain, G-beta repeat 866 903 IPR001680 GO:0005515
Viun9g03022 903 Pfam WD domain, G-beta repeat 620 650 IPR001680 GO:0005515
Viun9g03022 903 Pfam WD domain, G-beta repeat 700 737 IPR001680 GO:0005515
Viun9g03022 903 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 826 IPR001680 GO:0005515
Viun9g03022 903 CDD WD40 619 903 - -
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 660 IPR001680 GO:0005515
Viun9g03022 903 MobiDBLite consensus disorder prediction 413 454 - -
Viun9g03022 903 SUPERFAMILY WD40 repeat-like 617 903 IPR036322 GO:0005515
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 742 - -
Viun9g03022 903 Coils Coil 114 149 - -
Viun9g03022 903 SMART Lish 8 40 IPR006594 GO:0005515
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 871 903 - -
Viun9g03022 903 Pfam LisH 10 36 IPR006594 GO:0005515
Viun9g03022 903 MobiDBLite consensus disorder prediction 90 109 - -
Viun9g03022 903 ProSitePatterns Trp-Asp (WD) repeats signature. 680 694 IPR019775 -
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 903 IPR001680 GO:0005515
Viun9g03022 903 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun9g03022 903 MobiDBLite consensus disorder prediction 413 545 - -
Viun9g03022 903 MobiDBLite consensus disorder prediction 466 525 - -
Viun9g03022 903 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 903 - -
Viun9g03022 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 696 - -
Viun9g03022 903 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03022 Viun-Chr9 38023455 38032403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03022 698 902 Miscellaneous Gene Families AT5G08390 23.810 5.99e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun9g03022 WD40 0.0079 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03022 - - pvu:PHAVU_009G096600g 1356.27