Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03005 ATGGATAAAGTAGGTAAAGCGTGTGCCCAAGATGAAGAACGTCCAATACGTTTCACCAGAGCAAAGGCTAGAGCCTTGAGAGGAATTCCTCCTCCCCCCTCAAGACCTTCCTCCAAAAATGAACAGAAAAACATGTCTCGAGCAAATTCCAAAAGAGCAGCAGCTTCTGGAGATCAAACTTCTGTGGTTGTTCCTGCTCTTGGCCAAAATAAGAGAAGGGCAGTTCTGACAGATGTAACAAATATTTGCGCAGAATCACATGATAAGTGTACTGATGCATCAAAATTTAGGGCCAAAGGAGTTTATAGAAAGAAAAGCACAAAACGAGCTTCAGGTGTTACGTCTGAACTCTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGTTGAAGATTTATCAACAATAAGGATGGTAGAATCCAATGACACCATAAGTGAACGTGTTATGCCAGGCACCAAGCCGTCAATGCAAGATTCTGTGAAGTCCGAAGAATTCCAGAGCTCTTCAAAAAATGGTTTGTCTAAAATCTCAAGTGCTACTGCCCGTATGCAACAGACTTTAGATGTAGAAGTGATTTCTGAGAAGCCAGGAACCTCAAACTCCCTTGATATAGTGGACATTGATTCAGAGTTAAAGGATCCTCAAATTTGGAGTTCTTATGCCTCTGACATGTACAACAACATTCGAGTCACAGAGCTTAAAATGAAACCATTGACCAACTACATGGAGAAGTTGCAGACAGATATTAATCCAAGCATGCGTGGAATTCTGGTAGATTGGCTTGTGGAGGTTTCTGAGGAATACAAATTGGTTCCAGATGCTCTTTATCTGACAGTGAACCTCATTGATCGGTATCTCTCAACTAAATTTATTCAGAAGCAAAGGCTACAGTTGCTGGGTGTTACTAGCATGCTGATTGCATCAAAGTACGAAGAGATGTGCCCACCTCGAGTGGAAGAATTCTGCTTCATCACAGATAACACATACACAAAGGAAGAGGTACTCAAAATGGAGAGAGAAGTACTGAATGTGATTCATTTTCAGTTATCTGTTCCCACAATCAAAACATTTCTGAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTCTTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATATAGCTTCTTCCAGTTTCTTCCTTCTCTTGTAGCTGCATCTGCCGTGTTCCTTGCCAGATGGACCCTGAACGATTCAGAACATCCATGGAATCCAACTTTGGAGCACTATACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGAACTGCAAGATTTGCAACTTAATTCCAAAGGCTGTCCTCTCAATGCTGTTCGCGATAAGTATAAACTACAGAAGTTCAATTGTGTGGCAAACTTGTCCCCAAAACCGGTGCAGTCACTCTTCGAGGCCCAAGTGTAA 1458 0.4156 MDKVGKACAQDEERPIRFTRAKARALRGIPPPPSRPSSKNEQKNMSRANSKRAAASGDQTSVVVPALGQNKRRAVLTDVTNICAESHDKCTDASKFRAKGVYRKKSTKRASGVTSELSSTQENVRAKLVEDLSTIRMVESNDTISERVMPGTKPSMQDSVKSEEFQSSSKNGLSKISSATARMQQTLDVEVISEKPGTSNSLDIVDIDSELKDPQIWSSYASDMYNNIRVTELKMKPLTNYMEKLQTDINPSMRGILVDWLVEVSEEYKLVPDALYLTVNLIDRYLSTKFIQKQRLQLLGVTSMLIASKYEEMCPPRVEEFCFITDNTYTKEEVLKMEREVLNVIHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNDSEHPWNPTLEHYTNYKASELKTVVLELQDLQLNSKGCPLNAVRDKYKLQKFNCVANLSPKPVQSLFEAQV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03005 485 CDD CYCLIN_AtCycA-like_rpt2 352 466 - -
Viun9g03005 485 SMART cyclin_7 356 444 IPR013763 -
Viun9g03005 485 SMART cyclin_7 259 343 IPR013763 -
Viun9g03005 485 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g03005 485 MobiDBLite consensus disorder prediction 38 65 - -
Viun9g03005 485 SUPERFAMILY Cyclin-like 351 474 IPR036915 -
Viun9g03005 485 Pfam Cyclin, C-terminal domain 352 474 IPR004367 -
Viun9g03005 485 MobiDBLite consensus disorder prediction 146 173 - -
Viun9g03005 485 Gene3D - 223 471 - -
Viun9g03005 485 SMART Cyclin_C_2 352 475 IPR004367 -
Viun9g03005 485 SUPERFAMILY Cyclin-like 212 349 IPR036915 -
Viun9g03005 485 FunFam Cyclin A1 339 471 - -
Viun9g03005 485 PIRSF Cyclin_A_B_D_E 33 484 IPR046965 GO:0016538|GO:0044772
Viun9g03005 485 FunFam Mitotic cyclin 6 237 337 - -
Viun9g03005 485 Pfam Cyclin, N-terminal domain 223 349 IPR006671 -
Viun9g03005 485 MobiDBLite consensus disorder prediction 1 65 - -
Viun9g03005 485 ProSitePatterns Cyclins signature. 254 285 IPR006671 -
Viun9g03005 485 PANTHER CYCLINS 170 463 IPR039361 -
Viun9g03005 485 CDD CYCLIN_AtCycA_like_rpt1 213 348 - -
Viun9g03005 485 Gene3D - 237 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03005 Viun-Chr9 37896747 37902156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03005 16 481 Core Cell Cycle Gene Families AT5G25380 50.107 6.82e-150 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03005 K06627 - gmx:547780 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03005 9 37896747 37902156 Viun9g03005 9 37896747 37902156 ECH
Viun8g00837 8 7613428 7620007 Viun9g03005 9 37896747 37902156 PCT