Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03004 ATGGATAAAGTAGGTAAAGCGTGTGCCCAAGATGAAGAACGTCCAATACGTTTCACCAGAGCAAAGGCTAGAGCCTTGAGAGGAATTCCTCCTCCCCCCTCAAGACCTTCCTCCAAAAATGAACAGAAAAACATGTCTCGAGCAAATTCCAAAAGAGCAGCAGCTTCTGGAGATCAAACTTCTGTGGTTGTTCCTGCTCTTGGCCAAAATAAGAGAAGGGCAGTTCTGACAGATGTAACAAATATTTGCGCAGAATCACATGATAAGTGTACTGATGCATCAAAATTTAGGGCCAAAGGAGTTTATAGAAAGAAAAGCACAAAACGAGCTTCAGGTGTTACGTCTGAACTCTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGTTGAAGATTTATCAACAATAAGGATGGTAGAATCCAATGACACCATAAGTGAACGTGTTATGCCAGGCACCAAGCCGTCAATGCAAGATTCTGTGAAGTCCGAAGAATTCCAGAGCTCTTCAAAAAATGATGTAGAAGTGATTTCTGAGAAGCCAGGAACCTCAAACTCCCTTGATATAGTGGACATTGATTCAGAGTTAAAGGATCCTCAAATTTGGAGTTCTTATGCCTCTGACATGTACAACAACATTCGAGTCACAGAGCTTAAAATGAAACCATTGACCAACTACATGGAGAAGTTGCAGACAGATATTAATCCAAGCATGCGTGGAATTCTGGTAGATTGGCTTGTGGAGGTTTCTGAGGAATACAAATTGGTTCCAGATGCTCTTTATCTGACAGTGAACCTCATTGATCGGTATCTCTCAACTAAATTTATTCAGAAGCAAAGGCTACAGTTGCTGGGTGTTACTAGCATGCTGATTGCATCAAAGTACGAAGAGATGTGCCCACCTCGAGTGGAAGAATTCTGCTTCATCACAGATAACACATACACAAAGGAAGAGGTACTCAAAATGGAGAGAGAAGTACTGAATGTGATTCATTTTCAGTTATCTGTTCCCACAATCAAAACATTTCTGAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTCTTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATATAGCTTCTTCCAGTTTCTTCCTTCTCTTGTAGCTGCATCTGCCGTGTTCCTTGCCAGATGGACCCTGAACGATTCAGAACATCCATGGAATCCAACTTTGGAGCACTATACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGAACTGCAAGATTTGCAACTTAATTCCAAAGGCTGTCCTCTCAATGCTGTTCGCGATAAGTATAAACTACAGAAGTTCAATTGTGTGGCAAACTTGTCCCCAAAACCGGTGCAGTCACTCTTCGAGGCCCAAGTGTAA 1410 0.4156 MDKVGKACAQDEERPIRFTRAKARALRGIPPPPSRPSSKNEQKNMSRANSKRAAASGDQTSVVVPALGQNKRRAVLTDVTNICAESHDKCTDASKFRAKGVYRKKSTKRASGVTSELSSTQENVRAKLVEDLSTIRMVESNDTISERVMPGTKPSMQDSVKSEEFQSSSKNDVEVISEKPGTSNSLDIVDIDSELKDPQIWSSYASDMYNNIRVTELKMKPLTNYMEKLQTDINPSMRGILVDWLVEVSEEYKLVPDALYLTVNLIDRYLSTKFIQKQRLQLLGVTSMLIASKYEEMCPPRVEEFCFITDNTYTKEEVLKMEREVLNVIHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNDSEHPWNPTLEHYTNYKASELKTVVLELQDLQLNSKGCPLNAVRDKYKLQKFNCVANLSPKPVQSLFEAQV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03004 469 SMART Cyclin_C_2 336 459 IPR004367 -
Viun9g03004 469 CDD CYCLIN_AtCycA-like_rpt2 336 450 - -
Viun9g03004 469 ProSitePatterns Cyclins signature. 238 269 IPR006671 -
Viun9g03004 469 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g03004 469 MobiDBLite consensus disorder prediction 38 65 - -
Viun9g03004 469 Pfam Cyclin, N-terminal domain 207 333 IPR006671 -
Viun9g03004 469 SUPERFAMILY Cyclin-like 335 458 IPR036915 -
Viun9g03004 469 PIRSF Cyclin_A_B_D_E 30 468 IPR046965 GO:0016538|GO:0044772
Viun9g03004 469 FunFam Mitotic cyclin 6 221 321 - -
Viun9g03004 469 Gene3D - 207 455 - -
Viun9g03004 469 MobiDBLite consensus disorder prediction 1 65 - -
Viun9g03004 469 Pfam Cyclin, C-terminal domain 336 458 IPR004367 -
Viun9g03004 469 SMART cyclin_7 340 428 IPR013763 -
Viun9g03004 469 SMART cyclin_7 243 327 IPR013763 -
Viun9g03004 469 FunFam Cyclin A1 323 455 - -
Viun9g03004 469 PANTHER CYCLINS 164 447 IPR039361 -
Viun9g03004 469 SUPERFAMILY Cyclin-like 196 333 IPR036915 -
Viun9g03004 469 CDD CYCLIN_AtCycA_like_rpt1 197 332 - -
Viun9g03004 469 Gene3D - 221 334 - -
Viun9g03004 469 MobiDBLite consensus disorder prediction 148 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03004 Viun-Chr9 37896747 37902156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03004 16 465 Core Cell Cycle Gene Families AT5G25380 51.885 7.78e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03004 K06627 - gmx:547780 710.679