LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03004	ATGGATAAAGTAGGTAAAGCGTGTGCCCAAGATGAAGAACGTCCAATACGTTTCACCAGAGCAAAGGCTAGAGCCTTGAGAGGAATTCCTCCTCCCCCCTCAAGACCTTCCTCCAAAAATGAACAGAAAAACATGTCTCGAGCAAATTCCAAAAGAGCAGCAGCTTCTGGAGATCAAACTTCTGTGGTTGTTCCTGCTCTTGGCCAAAATAAGAGAAGGGCAGTTCTGACAGATGTAACAAATATTTGCGCAGAATCACATGATAAGTGTACTGATGCATCAAAATTTAGGGCCAAAGGAGTTTATAGAAAGAAAAGCACAAAACGAGCTTCAGGTGTTACGTCTGAACTCTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGTTGAAGATTTATCAACAATAAGGATGGTAGAATCCAATGACACCATAAGTGAACGTGTTATGCCAGGCACCAAGCCGTCAATGCAAGATTCTGTGAAGTCCGAAGAATTCCAGAGCTCTTCAAAAAATGATGTAGAAGTGATTTCTGAGAAGCCAGGAACCTCAAACTCCCTTGATATAGTGGACATTGATTCAGAGTTAAAGGATCCTCAAATTTGGAGTTCTTATGCCTCTGACATGTACAACAACATTCGAGTCACAGAGCTTAAAATGAAACCATTGACCAACTACATGGAGAAGTTGCAGACAGATATTAATCCAAGCATGCGTGGAATTCTGGTAGATTGGCTTGTGGAGGTTTCTGAGGAATACAAATTGGTTCCAGATGCTCTTTATCTGACAGTGAACCTCATTGATCGGTATCTCTCAACTAAATTTATTCAGAAGCAAAGGCTACAGTTGCTGGGTGTTACTAGCATGCTGATTGCATCAAAGTACGAAGAGATGTGCCCACCTCGAGTGGAAGAATTCTGCTTCATCACAGATAACACATACACAAAGGAAGAGGTACTCAAAATGGAGAGAGAAGTACTGAATGTGATTCATTTTCAGTTATCTGTTCCCACAATCAAAACATTTCTGAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTCTTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATATAGCTTCTTCCAGTTTCTTCCTTCTCTTGTAGCTGCATCTGCCGTGTTCCTTGCCAGATGGACCCTGAACGATTCAGAACATCCATGGAATCCAACTTTGGAGCACTATACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGAACTGCAAGATTTGCAACTTAATTCCAAAGGCTGTCCTCTCAATGCTGTTCGCGATAAGTATAAACTACAGAAGTTCAATTGTGTGGCAAACTTGTCCCCAAAACCGGTGCAGTCACTCTTCGAGGCCCAAGTGTAA	1410	0.4156	MDKVGKACAQDEERPIRFTRAKARALRGIPPPPSRPSSKNEQKNMSRANSKRAAASGDQTSVVVPALGQNKRRAVLTDVTNICAESHDKCTDASKFRAKGVYRKKSTKRASGVTSELSSTQENVRAKLVEDLSTIRMVESNDTISERVMPGTKPSMQDSVKSEEFQSSSKNDVEVISEKPGTSNSLDIVDIDSELKDPQIWSSYASDMYNNIRVTELKMKPLTNYMEKLQTDINPSMRGILVDWLVEVSEEYKLVPDALYLTVNLIDRYLSTKFIQKQRLQLLGVTSMLIASKYEEMCPPRVEEFCFITDNTYTKEEVLKMEREVLNVIHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNDSEHPWNPTLEHYTNYKASELKTVVLELQDLQLNSKGCPLNAVRDKYKLQKFNCVANLSPKPVQSLFEAQV	469

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03004	469	SMART	Cyclin_C_2	336	459	IPR004367	-
	Viun9g03004	469	CDD	CYCLIN_AtCycA-like_rpt2	336	450	-	-
	Viun9g03004	469	ProSitePatterns	Cyclins signature.	238	269	IPR006671	-
	Viun9g03004	469	MobiDBLite	consensus disorder prediction	1	20	-	-
	Viun9g03004	469	MobiDBLite	consensus disorder prediction	38	65	-	-
	Viun9g03004	469	Pfam	Cyclin, N-terminal domain	207	333	IPR006671	-
	Viun9g03004	469	SUPERFAMILY	Cyclin-like	335	458	IPR036915	-
	Viun9g03004	469	PIRSF	Cyclin_A_B_D_E	30	468	IPR046965	GO:0016538\|GO:0044772
	Viun9g03004	469	FunFam	Mitotic cyclin 6	221	321	-	-
	Viun9g03004	469	Gene3D	-	207	455	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03004	Viun-Chr9	37896747	37902156	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03004	16	465	Core Cell Cycle Gene Families	AT5G25380	51.885	7.78e-152	437

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03004	K06627		-	gmx:547780	710.679

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